output
20042024
most citedARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

2.5k citations

Showing 2014Show all

7 papers · 1 filter

q-bio.PE201410 cited

Inverse Ising inference with correlated samples

Benedikt Obermayer, Erel Levine

Correlations between two variables of a high-dimensional system can be indicative of an underlying interaction, but can also result from indirect effects. Inverse Ising inference i…

cond-mat.dis-nn2014101 cited

Multifarious Assembly Mixtures: Systems Allowing Retrieval of Diverse Stored Structures

Arvind Murugan, Zorana Zeravcic, Michael P. Brenner +1

Self-assembly materials are traditionally designed so that molecular or meso-scale components form a single kind of large structure. Here, we propose a scheme to create "multifario…

q-bio.PE20141 cited

The impact of macroscopic epistasis on long-term evolutionary dynamics

Benjamin H. Good, Michael M. Desai

Genetic interactions can strongly influence the fitness effects of individual mutations, yet the impact of these epistatic interactions on evolutionary dynamics remains poorly unde…

q-bio.PE20141 cited

Deleterious passengers in adapting populations

Benjamin H Good, Michael M Desai

Most new mutations are deleterious and are eventually eliminated by natural selection. But in an adapting population, the rapid amplification of beneficial mutations can hinder the…

q-bio.BM2014104 cited

Protein sectors: statistical coupling analysis versus conservation

Tiberiu Tesileanu, Lucy J. Colwell, Stanislas Leibler

Statistical coupling analysis (SCA) is a method for analyzing multiple sequence alignments that was used to identify groups of coevolving residues termed "sectors". The method appl…

q-bio.MN2014134 cited

Evolution of bow-tie architectures in biology

Tamar Friedlander, Avraham E. Mayo, Tsvi Tlusty +1

Bow-tie or hourglass structure is a common architectural feature found in biological and technological networks. A bow-tie in a multi-layered structure occurs when intermediate lay…