output
20042024
most citedARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context

2.5k citations

120 papers

physics.app-ph2024★ 11 cited

Optical Coherence Elastography Measures Mechanical Tension in the Lens and Capsule

Xu Feng, Guo-yang Li, Yuxuan Jiang +2

Lens tension is essential for accommodative vision but remains difficult to measure with precision. Here, we present an optical coherence elastography (OCE) technique that quantifi…

q-bio.BM2024★ 2 cited

Multi-modal Representation Learning Enables Accurate Protein Function Prediction in Low-Data Setting

Serbülent Ünsal, Sinem Özdemir, Bünyamin Kasap +4

In this study, we propose HOPER (HOlistic ProtEin Representation), a novel multimodal learning framework designed to enhance protein function prediction (PFP) in low-data settings.…

q-bio.BM2024★ 1 cited

QuickBind: A Light-Weight And Interpretable Molecular Docking Model

Wojtek Treyde, Seohyun Chris Kim, Nazim Bouatta +1

Predicting a ligand's bound pose to a target protein is a key component of early-stage computational drug discovery. Recent developments in machine learning methods have focused on…

cs.LG2024★ 5 cited

Generative AI in Health Economics and Outcomes Research: A Taxonomy of Key Definitions and Emerging Applications, an ISPOR Working Group Report

Rachael Fleurence, Xiaoyan Wang, Jiang Bian +5

Objective: This article offers a taxonomy of generative artificial intelligence (AI) for health economics and outcomes research (HEOR), explores its emerging applications, and outl…

cs.CY2024★ 4 cited

Learning and teaching biological data science in the Bioconductor community

Jenny Drnevich, Frederick J. Tan, Fabricio Almeida-Silva +15

Modern biological research is increasingly data-intensive, leading to a growing demand for effective training in biological data science. In this article, we provide an overview of…

cs.DM2024★ 1 cited

Automated Inference of Graph Transformation Rules

Jakob L. Andersen, Akbar Davoodi, Rolf Fagerberg +6

The explosion of data available in life sciences is fueling an increasing demand for expressive models and computational methods. Graph transformation is a model for dynamic system…