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Dynamical maximum entropy approach to flocking
Andrea Cavagna, Irene Giardina, Francesco Ginelli +4
We derive a new method to infer from data the out-of-equilibrium alignment dynamics of collectively moving animal groups, by considering the maximum entropy distribution consistent…
Social interactions dominate speed control in driving natural flocks toward criticality
William Bialek, Andrea Cavagna, Irene Giardina +5
Flocks of birds exhibit a remarkable degree of coordination and collective response. It is not just that thousands of individuals fly, on average, in the same direction and at the…
The effect of phenotypic selection on stochastic gene expression
Thierry Mora, Aleksandra M. Walczak
Genetically identical cells in the same population can take on phenotypically variable states, leading to differentiated responses to external signals, such as nutrients and drug-i…
Beyond position weight matrices: nucleotide correlations in transcription factor binding sites and their description
Marc Santolini, Thierry Mora, Vincent Hakim
The identification of transcription factor binding sites (TFBSs) on genomic DNA is of crucial importance for understanding and predicting regulatory elements in gene networks. TFBS…