Polymer Translocation througha Pore in a Membrane
arXiv:cond-mat/9802098 · doi:10.1103/PhysRevLett.77.783
Abstract
We construct a new statistical physical model of polymer translocation through a pore in a membrane treated as the diffusion process across a free energy barrier. We determine the translocation time in terms of chain flexibility yielding an entropic barrier, as well as in terms of the driving mechanisms such as transmembrane chemical potential difference and Brownian ratchets. It turns out that, while the chemical potential differences induce pronounced effects on translocation due to the long-chain nature of the polymer, the ratchets suppress this effect and chain flexibility.
arXiv comment4 pages, 5 figures, published in Phys. Rev. Lett. 77, 783(1996)
Cited by in corpus (152)
- Physical approaches to DNA sequencing and detection
- Kinetic Equations for Diffusion in the Presence of Entropic Barriers
- Driven Polymer Translocation Through a Narrow Pore
- Anomalous Dynamics of Translocation
- Stochastic mechano-chemical kinetics of molecular motors: a multidisciplinary enterprise from a physicist's perspective
- Polymer Translocation Through a Long Nanopore
- Influence of polymer-pore interactions on translocation
- Sequence dependence of DNA translocation through a nanopore
- Effect of Salt Concentration on the Electrophoretic Speed of a Polyelectrolyte through a Nanopore
- Langevin Dynamics Simulations of Polymer Translocation through Nanopores
- Polymer translocation through a nanopore - a showcase of anomalous diffusion
- Unifying model of driven polymer translocation
- Driven polymer translocation through nanopores: slow versus fast dynamics
- Polymer translocation through a nanopore: a two-dimensional Monte Carlo simulation
- Driven polymer translocation through a nanopore: a manifestation of anomalous diffusion
- Anomalous Dynamics of Unbiased Polymer Translocation through a Narrow Pore
- Polymer translocation through a nanopore under an applied external field
- When translocation dynamics becomes anomalous
- Confinement-driven translocation of a flexible polymer
- Geometric Stochastic Resonance
- Dynamics of Molecular Motors and Polymer Translocation with Sequence Heterogeneity
- Dynamical Scaling Exponents for Polymer Translocation through a Nanopore
- Comment on ``Passage Times for Unbiased Polymer Translocation through a Narrow Pore''
- Multiscale coupling of molecular dynamics and hydrodynamics: application to DNA translocation through a nanopore
- Passage Times for Unbiased Polymer Translocation through a Narrow Pore
- Transition-Event Durations in One Dimensional Activated Processes
- Scaling exponents of Forced Polymer Translocation through a nano-pore
- Hydrodynamic correlations in the translocation of biopolymer through a nanopore: theory and multiscale simulations
- What drives the translocation of stiff chains?
- Influence of non-universal effects on dynamical scaling in driven polymer translocation
- Dynamics of DNA Ejection From Bacteriophage
- Polymer Translocation in Crowded Environments
- Polymer translocation through a nanopore under a pulling force
- Effective charge and free energy of DNA inside an ion channel
- Translocation of structured polynucleotides through nanopores
- Polymer Release out of a Spherical Vesicle through a Pore
- Active polymer translocation through flickering pores
- Electrophoresis of a polyelectrolyte through a nanopore
- Self-energy limited ion transport in sub-nanometer channels
- Dynamics of forced biopolymer translocation
- Chaperone-assisted translocation of a polymer through a nanopore
- Iso-Flux Tension Propagation Theory of Driven Polymer Translocation: The Role of Initial Configurations
- Heteropolymer translocation through nanopores
- Out of Equilibrium Characteristics of a Forced Translocating Chain through a Nanopore
- Scaling theory of driven polymer translocation
- Anomalous Diffusion with Absorbing Boundary
- Chaperone assisted translocation
- Passage Times for Polymer Translocation Pulled through a Narrow Pore
- Process Time Distribution of Driven Polymer Transport
- DNA in nanopore-counterion condensation and coion depletion
- Quantized current blockade and hydrodynamic correlations in biopolymer translocation through nanopores: evidence from multiscale simulations
- Through the Eye of the Needle: Recent Advances in Understanding Biopolymer Translocation
- Polymer Translocation out of Planar Confinements
- Polymer translocation into a fluidic channel through a nanopore
- Coupled dynamics of RNA folding and nanopore translocation
- First passage times and asymmetry of DNA translocation
- Translocation Dynamics with Attractive Nanopore-Polymer Interactions
- Critical evaluation of the computational methods used in the forced polymer translocation
- Polymer translocation under time-dependent driving forces: resonant activation induced by attractive polymer-pore interactions
- Electrophoretic Capture of a DNA Chain into a Nanopore
- Polymer Translocation Dynamics in the Quasi-Static Limit
- Theory of pore-driven and end-pulled polymer translocation dynamics through a nanopore: An overview
- Theory of polymer translocation through a flickering nanopore under an alternating driving force
- Single Stranded DNA Translocation Through A Nanopore: A Master Equation Approach
- Origin of translocation barriers for polyelectrolyte chains
- Non-driven polymer translocation through a nanopore: computational evidence that the escape and relaxation processes are coupled
- Probability distributions for polymer translocation
- Directed motion emerging from two coupled random processes: Translocation of a chain through a membrane nanopore driven by binding proteins
- Dynamics of DNA translocation through an attractive nanopore
- Kink motion in the Kramers problem for a chain molecule
- First Passage Distributions in a Collective Model of Anomalous Diffusion with Tunable Exponent
- The chain sucker: translocation dynamics of a polymer chain into a long narrow channel driven by longitudinal flow
- Simulations of Two-Dimensional Unbiased Polymer Translocation Using the Bond Fluctuation Model
- Role of Non-Equilibrium Conformations on Driven Polymer Translocation
- Dynamics of Polymer Decompression: Expansion, Unfolding and Ejection
- Fractional Brownian motion and the critical dynamics of zipping polymers
- Translocation and encapsulation of siRNA inside carbon nanotubes
- Polymer translocation out of confined environments
- Stochastic sensing of polynucleotides using patterned nanopores
- DNA uptake into nuclei: Numerical and analytical results
- Translocation of a Polymer through a Nanopore across a Viscosity Gradient
- Mapping the energy landscape of biomolecules using single molecule force correlation spectroscopy (FCS): Theory and applications
- Diffusion of large particles through small pores: from entropic to enthalpic transport
- Translocation through environments with time dependent mobility
- Driven polymer translocation through a cylindrical nanochannel: Interplay between the channel length and the chain length
- Translocation time of periodically forced polymer chains
- Adsorption assisted translocation of a chain molecule through a pore in a spherical vesicle
- Effect of Inhomogeneity in Translocation of Polymers through Nanopores
- Translocation of a Single Stranded DNA Through a Conformationally Changing Nanopore
- Self-organized escape of oscillator chains in nonlinear potentials
- Sequencing of semiflexible polymers of varying bending rigidity using patterned pores
- Cis-Trans Dynamical Asymmetry in Driven Polymer Translocation
- Confinement free energy of flexible polyelectrolytes in spherical cavities
- Dynamics of end-pulled polymer translocation through a nanopore
- Ionic current inversion in pressure-driven polymer translocation through nanopores
- Dynamics of polymer translocation into a circular nanocontainer through a nanopore
- Effect of charge distribution on the translocation of an inhomogeneously charged polymer through a nanopore
- Segregation of Polymers in Confined Spaces
- Polymer translocation into laterally unbounded confined environments
- Chaperone-assisted translocation of flexible polymers in three dimensions
- Using a Péclet Number for the Translocation of Polymer through a Nanopore to Tune Coarse-Grained Simulations to Experimental Conditions
- Criteria for minimal model of driven polymer translocation
- Statistical Mechanics of Membrane Protein Conformation: A Homopolymer Model
- Evaluating the Applicability of the Fokker-Planck Equation in Polymer Translocation: A Brownian Dynamics Study
- Translational Mobilities of Proteins in Nanochannels: A Coarse-Grained Molecular Dynamics Study
- Self-propulsion against a moving membrane: enhanced accumulation and drag force
- Translocation through a narrow pore under a puling force
- Dynamics of polymer ejection from capsid
- Translocation of stiff polymers through a nanopore driven by binding particles
- Transport in polymer membranes beyond linear response: Controlling permselectivity by the driving force
- Electric-field-driven polymer entry into asymmetric nanoscale channels
- Translocation of polymers with folded configurations across nanopores
- Exploring DNA translocation through a nanopore via a multiscale Lattice-Boltzmann Molecular-Dynamics methodology
- Escape transition of a polymer chain from a nanotube: how to avoid spurious results by use of the force-biased pruned-enriched Rosenbluth algorithm
- Noise driven translocation of short polymers in crowded solutions
- Multivalent cation induced attraction of anionic polymers by like-charged pores
- Noise effects in polymer dynamics
- Reducing the variance in the translocation times by pre-stretching the polymer
- Polymer translocation through nanopore assisted by an environment of active rods
- Enhanced polymer capture speed and extended translocation time in pressure-solvation traps
- Driven translocation of a semiflexible polymer through a conical channel in the presence of attractive surface interactions
- Surmounting collectively oscillating bottlenecks
- Active translocation of a semiflexible polymer assisted by an ATP-based molecular motor
- Event distributions of polymer translocation
- Cooperative surmounting of bottlenecks
- On the Lubensky-Nelson model of polymer translocation through nanopores
- Effects of static and temporally fluctuating tensions on semiflexible polymer looping
- Anomalous scaling in nanopore translocation of structured heteropolymers
- Pulling a DNA molecule through a nanopore embedded in an anionic membrane: tension propagation coupled to electrostatics
- Free Energy Evaluation in Polymer Translocation via Jarzynski Equality
- Free-energy cost of localizing a single monomer of a confined polymer
- Statistical mechanics of a polymer chain attached to the interface of a cone-shaped channel
- Dielectric manipulation of polymer translocation dynamics in engineered membrane nanopores
- Translocation of short and long polymers through an interacting pore
- Polymer Escape from a Metastable Kramers potential: Path Integral Hyperdynamics Study
- Force spectroscopy analysis in polymer translocation
- Coupling Lattice Boltzmann with Atomistic Dynamics for the multiscale simulation of nano-biological flows
- Modulational instability and resonant wave modes act on the metastability of oscillator chains
- Electrostatics of polymer translocation events in electrolyte solutions
- Numerical simulation of conformational variability in biopolymer translocation through wide nanopores
- End-pulled polymer translocation through a many-body flexible pore
- Field - Driven Translocation of Regular Block Copolymers through a Selective Liquid - Liquid Interface
- Nonlinear response of a linear chain to weak driving
- Polymer escape from a confining potential
- Mean velocity and effective diffusion constant for translocation of biopolymer chains across membrane
- Polymer translocation driven by longitudinal and transversal time-dependent end-pulling forces
- Finite-size scaling in unbiased translocation dynamics
- Theoretical modeling of polymer translocation: From the electrohydrodynamics of short polymers to the fluctuating long polymers
- Translocation time of a polymer chain through an energy gradient nanopore
- Dielectric trapping of biopolymers translocating through insulating membranes
- Coarse-grained simulation of polymer translocation through an artificial nanopore
- Sensing Translocating Polymers via Induced Magnetic Fields