output
19982025
most citedSecond-generation PLINK: rising to the challenge of larger and richer datasets

14.3k citations

Showing 2024Show all

13 papers · 1 filter

physics.med-ph2024★ 3 cited

A Method for Imaging the Ischemic Penumbra with MRI using IVIM

Mira M. Liu, Niloufar Saadat, Steven P. Roth +5

This work examines the hypothesis that intravoxel incoherent motion MRI (IVIM) can quantify local cerebral blood flow (qCBF), infarct volume, and define the ischemic penumbra for d…

physics.med-ph2024

Impact of normal lung volume choices on radiation pneumonitis risk prediction in locally advanced NSCLC radiotherapy

Alyssa Gadsby, Tian Liu, Robert Samstein +4

This study is to evaluate the impact of lung volume choices on predicting radiation pneumonitis (RP) risk in patients with locally advanced NSCLC undergoing radiotherapy. Dosimetri…

cs.CY2024★ 10 cited

Environment Scan of Generative AI Infrastructure for Clinical and Translational Science

Betina Idnay, Zihan Xu, William G. Adams +54

This study reports a comprehensive environmental scan of the generative AI (GenAI) infrastructure in the national network for clinical and translational science across 36 instituti…

cs.CL2024★ 10 cited

Vision-Language and Large Language Model Performance in Gastroenterology: GPT, Claude, Llama, Phi, Mistral, Gemma, and Quantized Models

Seyed Amir Ahmad Safavi-Naini, Shuhaib Ali, Omer Shahab +15

Background and Aims: This study evaluates the medical reasoning performance of large language models (LLMs) and vision language models (VLMs) in gastroenterology. Methods: We used…

cs.LG2024★ 3 cited

Large Language Models versus Classical Machine Learning: Performance in COVID-19 Mortality Prediction Using High-Dimensional Tabular Data

Mohammadreza Ghaffarzadeh-Esfahani, Mahdi Ghaffarzadeh-Esfahani, Arian Salahi-Niri +39

This study compared the performance of classical feature-based machine learning models (CMLs) and large language models (LLMs) in predicting COVID-19 mortality using high-dimension…

stat.AP2024★ 3 cited

Hierarchical Bayesian estimation of motor-evoked potential recruitment curves yields accurate and robust estimates

Vishweshwar Tyagi, Lynda M. Murray, Ahmet S. Asan +5

Electromagnetic stimulation probes and modulates the neural systems that control movement. Key to understanding their effects is the muscle recruitment curve, which maps evoked pot…

eess.IV2024★ 2 cited

X-ray2CTPA: Leveraging Diffusion Models to Enhance Pulmonary Embolism Classification

Noa Cahan, Eyal Klang, Galit Aviram +4

Chest X-rays or chest radiography (CXR), commonly used for medical diagnostics, typically enables limited imaging compared to computed tomography (CT) scans, which offer more detai…

cs.CL2024★ 22 cited

Two-Layer Retrieval-Augmented Generation Framework for Low-Resource Medical Question Answering Using Reddit Data: Proof-of-Concept Study

Sudeshna Das, Yao Ge, Yuting Guo +19

The increasing use of social media to share lived and living experiences of substance use presents a unique opportunity to obtain information on side effects, use patterns, and opi…

cs.CL2024★ 31 cited

Extracting Social Support and Social Isolation Information from Clinical Psychiatry Notes: Comparing a Rule-based NLP System and a Large Language Model

Braja Gopal Patra, Lauren A. Lepow, Praneet Kasi Reddy Jagadeesh Kumar +16

Background: Social support (SS) and social isolation (SI) are social determinants of health (SDOH) associated with psychiatric outcomes. In electronic health records (EHRs), indivi…

cs.CL2024★ 11 cited

COMPASS: Computational Mapping of Patient-Therapist Alliance Strategies with Language Modeling

Baihan Lin, Djallel Bouneffouf, Yulia Landa +3

The therapeutic working alliance is a critical predictor of psychotherapy success. Traditionally, working alliance assessment relies on questionnaires completed by both therapists…

eess.IV2024★ 2 cited

VIS-MAE: An Efficient Self-supervised Learning Approach on Medical Image Segmentation and Classification

Zelong Liu, Andrew Tieu, Nikhil Patel +9

Artificial Intelligence (AI) has the potential to revolutionize diagnosis and segmentation in medical imaging. However, development and clinical implementation face multiple challe…

eess.IV2024★ 4 cited

MRAnnotator: multi-Anatomy and many-Sequence MRI segmentation of 44 structures

Alexander Zhou, Zelong Liu, Andrew Tieu +16

In this retrospective study, we annotated 44 structures on two datasets: an internal dataset of 1,518 MRI sequences from 843 patients at the Mount Sinai Health System, and an exter…

stat.ME2024

Prediction of causal genes at GWAS loci with pleiotropic gene regulatory effects using sets of correlated instrumental variables

Mariyam Khan, Adriaan-Alexander Ludl, Sean Bankier +2

Multivariate Mendelian randomization (MVMR) is a statistical technique that uses sets of genetic instruments to estimate the direct causal effects of multiple exposures on an outco…