191 citations · 243 across the 5 of their papers we have counts for
5 papers
Functions of Bifans in Context of Multiple Regulatory Motifs in Signaling Networks
Azi Lipshtat, Sudarshan P. Purushothaman, Ravi Iyengar +1
Representation of intracellular signaling networks as directed graphs allows for the identification of regulatory motifs. Regulatory motifs are groups of nodes with the same connec…
An "All Possible Steps" Approach to the Accelerated Use of Gillespie's Algorithm
Azi Lipshtat
Many physical and biological processes are stochastic in nature. Computational models and simulations of such processes are a mathematical and computational challenge. The basic st…
Deterministic and Stochastic Simulations of Simple Genetic Circuits
Ofer Biham, Nathalie Q. Balaban, Adiel Loinger +2
We analyze three simple genetic circuits which involve transcriptional regulation and feedback: the autorepressor, the switch and the repressilator, that consist of one, two and th…
Stochastic Simulations of Genetic Switch Systems
Adiel Loinger, Azi Lipshtat, Nathalie Q. Balaban +1
Genetic switch systems with mutual repression of two transcription factors are studied using deterministic methods (rate equations) and stochastic methods (the master equation and…
Genetic Toggle Switch Without Cooperative Binding
Azi Lipshtat, Adiel Loinger, Nathalie Q. Balaban +1
Genetic switch systems with mutual repression of two transcription factors are studied using deterministic and stochastic methods. Numerous studies have concluded that cooperative…