92 citations · 97 across the 4 of their papers we have counts for
4 papers
BioSimulators: a central registry of simulation engines and services for recommending specific tools
Bilal Shaikh, Lucian P. Smith, Dan Vasilescu +68
Computational models have great potential to accelerate bioscience, bioengineering, and medicine. However, it remains challenging to reproduce and reuse simulations, in part, becau…
Exact Parallelization of the Stochastic Simulation Algorithm for Scalable Simulation of Large Biochemical Networks
Arthur P. Goldberg, David R. Jefferson, John A. P. Sekar +1
Comprehensive simulations of the entire biochemistry of cells have great potential to help physicians treat disease and help engineers design biological machines. But such simulati…
ObjTables: structured spreadsheets that promote data quality, reuse, and integration
Jonathan R. Karr, Wolfram Liebermeister, Arthur P. Goldberg +2
A central challenge in science is to understand how systems behaviors emerge from complex networks. This often requires aggregating, reusing, and integrating heterogeneous informat…
Emerging whole-cell modeling principles and methods
Arthur P. Goldberg, Balázs Szigeti, Yin Hoon Chew +3
Whole-cell computational models aim to predict cellular phenotypes from genotype by representing the entire genome, the structure and concentration of each molecular species, each…