Selfconsistent order-N density-functional calculations for very large systems
arXiv:cond-mat/9601002 · doi:10.1103/PhysRevB.53.R10441
Abstract
We present a method to perform fully selfconsistent density-functional calculations, which scales linearly with the system size and which is well suited for very large systems. It uses strictly localized pseudoatomic orbitals as basis functions. The sparse Hamiltonian and overlap matrices are calculated with an effort. The long range selfconsistent potential and its matrix elements are computed in a real-space grid. The other matrix elements are directly calculated and tabulated as a function of the interatomic distances. The computation of the total energy and atomic forces is also done in operations using truncated, Wannier-like localized functions to describe the occupied states, and a band-energy functional which is iteratively minimized with no orthogonality constraints. We illustrate the method with several examples, including carbon and silicon supercells with up to 1000 Si atoms and supercells of -CN. We apply the method to solve the existing controversy about the faceting of large icosahedral fullerenes by performing dynamical simulations on C, C, and C.
RevTeX, 4 pages (2 figures included in the RevTeX file)
References in corpus (2)
Cited by in corpus (261)
- The SIESTA method for ab initio order-N materials simulation
- Efficient index handling of multidimensional periodic boundary conditions
- Density functional method for nonequilibrium electron transport
- Maximally-localized generalized Wannier functions for composite energy bands
- A Higher-Accuracy van der Waals Density Functional
- Efficient implementation of a van der Waals density functional: Application to double-wall carbon nanotubes
- Numerical atomic orbitals for linear scaling
- ab initio modeling of open systems: charge transfer, electron conduction, and molecular switching of a C_{60} device
- Atomic-scale control of graphene magnetism using hydrogen atoms
- SIESTA: recent developments and applications
- Maximally-localized Wannier functions for disordered systems: application to amorphous silicon
- Transmission eigenchannels from non-equilibrium Green's functions
- Spin currents in rough graphene nanoribbons: Universal fluctuations and spin injection
- Density, structure and dynamics of water: the effect of Van der Waals interactions
- A new multi-center approach to the exchange-correlation interactions in ab initio tight-binding methods
- Stiff monatomic gold wires with a spinning zigzag geometry
- Appearance of room temperature ferromagnetism in Cu-doped TiO films
- A first-principles approach to electrical transport in atomic-scale nanostructures
- Electronic and structural characterization of divacancies in irradiated graphene
- Recent progress with large-scale ab initio calculations: the CONQUEST code
- Electronic stopping power in insulators from first principles
- Transverse conductance of DNA nucleotides in a graphene nanogap from first principles
- Electronic properties of 8-Pmmn borophene
- Group theory analysis of electrons and phonons in N-layer graphene systems
- First principles prediction of the elastic, electronic, and optical properties of Sb2S3 and Sb2Se3 compounds
- Network equilibration and first-principles liquid water
- First-principles study of structural, elastic, and bonding properties of pyrochlores
- Electronic properties of bulk and thin film SrRuO: a search for the metal-insulator transition
- Mechanical properties of Graphene Nanoribbons
- Magnetism in BN nanotubes induced by Carbon Substitution
- Ferroelectricity and isotope effects in hydrogen-bonded KDP crystals
- Density-functional study of LixMoS2 intercalates (0<=x<=1)
- Electronic stopping power in gold: The role of d electrons and the H/He anomaly
- Fullerene-based molecular nanobridges: A first-principles study
- Anomalous Nuclear Quantum Effects in Ice
- First-principles calculation of the band offset at BaO/BaTiO and SrO/SrTiO interfaces
- Vibrational properties of graphene nanoribbons by first-principles calculations
- A critical analysis of vacancy-induced magnetism in mono and bilayer graphene
- Theory of Sodium Ordering in NaxCoO2
- First-principles study of ferroelectricity and isotope effects in H-bonded KDP crystals
- Reverse Monte Carlo modeling of amorphous silicon
- Transverse Electronic Transport through DNA Nucleotides with Functionalized Graphene Electrodes
- Origin Of Current-Induced Forces In An Atomic Gold Wire: A First Principles Study
- Scanning Quantum Dot Microscopy
- Energetics and dynamics of H adsorbed in a nanoporous material at low temperature
- Transformation Pathways of Silica under High Pressure
- Superhard sp3 carbon allotropes with odd and even ring topologies
- Basis Functions for Linear-Scaling First-Principles Calculations
- Hydrostatic Pressure Effects on the Structural and Electronic Properties of Carbon Nanotubes
- A density-functional study of charge doping in WO3
- I-V characteristics and differential conductance fluctuations of Au nanowires
- Stability, Adsorption and Diffusion of CH4, CO2 and H2 in Clathrate Hydrates
- Electrons in Dry DNA from Density Functional Calculations
- On electrons and hydrogen-bond connectivity in liquid water
- New Superhard Phases for 3D C60-based Fullerites
- Accurate ionic forces and geometry optimisation in linear scaling density-functional theory with local orbitals
- Topology of the polarization field in ferroelectric nanowires from first principles
- Effective and accurate representation of extended Bloch states on finite Hilbert spaces
- Structures of Si and Ge nanowires in the sub-nanometer range
- The PSML format and library for norm-conserving pseudopotential data curation and interoperability
- Bonding, Moment Formation, and Magnetic Interactions in Ca14MnBi11 and Ba14MnBi11
- Quantitative Current-Voltage Characteristics in Molecular Junctions from First Principles
- Optical conductivity of wet DNA
- Surface phase transitions in BiFeO3 below room temperature
- Polarons in Carbon Nanotubes
- Double Au rows on Si(553) surface
- Size, oxidation, and strain in small Si/SiO2 nanocrystals
- Energetics of the oxidation and opening of a carbon nanotube
- Oxide superlattices with alternating p and n interfaces
- Electromechanical Effects in Carbon Nanotubes
- Oxygen clamps in gold nanowires
- Accurate tight-binding Hamiltonian matrices from ab-initio calculations: Minimal basis sets
- The electron-phonon coupling is large for localized states
- Two-dimensional semiconducting nanostructures based on single graphene sheets with lines of adsorbed hydrogen atoms
- Functionalization of carbon nanotubes with -CHn, -NHn fragments, -COOH and -OH groups
- Preferential positioning of dopants and co-dopants in embedded and freestanding Si nanocrystals
- Structural, electronic and magnetic properties of vacancies in single-walled carbon nanotubes
- Magnetism and half-metallicity at the O surfaces of ceramic oxides
- Silicon Nanocrystallites in SiO2 Matrix: The Role of Disorder and Size
- Symmetry properties of vibrational modes in graphene nanoribbons
- Origin of bulk uniaxial anisotropy in zinc-blende dilute magnetic semiconductors
- Quasiparticle Excitations and Charge Transition Levels of Oxygen Vacancies in Hafnia
- Extended Huckel theory for bandstructure, chemistry, and transport. II. Silicon
- Reversible Metal-Semiconductor Transition of ssDNA-Decorated Single-Walled Carbon Nanotubes
- Structural relaxations in electronically excited poly(para-phenylene)
- High Luminescence in Small Si/SiO2 Nanocrystals: A Theoretical Study
- Tip and Surface Determination from Experiments and Simulations of Scanning Tunneling Microscopy and Spectroscopy
- Dislocation formation from a surface step in semiconductors: an ab initio study
- Graphene based sensors: theoretical study
- Electronic Structure of Large-Scale Graphene Nanoflakes
- Photoexcitation Induced Quantum Dynamics of Charge Density Wave and Emergence of a Collective Mode in 1T-TaS
- evidence for nonthermal characteristics in ultrafast laser melting
- Adsorption-Induced Solvent-Based Electrostatic Gating of Charge Transport through Molecular Junctions
- Enhanced configurational entropy in high-density nanoconfined bilayer ice
- Current rectification by simple molecular quantum dots: an ab-initio study
- Critical comparison of electrode models in density functional theory based quantum transport calculations
- Magnetism of two-dimensional defects in Pd: stacking faults, twin boundaries and surfaces
- Evaluation of New Density Functional with Account of van der Waals Forces by Use of Experimental H2 Physisorption Data on Cu(111)
- Cumulene Molecular Wire Conductance from First Principles
- Comparative study of the electronic structure, phonon spectra and electron-phonon interaction of ZrB2 and TiB2
- Kinetic energy of protons in ice Ih and water: a path integral study
- Hydrogenation-induced ferromagnetism on graphite surfaces
- Ferrodistortive instability at the (001) surface of half-metallic manganites
- Atomic layering at the liquid silicon surface: a first- principles simulation
- Fermi level influence on the adsorption at semiconductor surfaces - ab initio simulations
- Atomistic Simulations of Highly Conductive Molecular Transport Junctions Under Realistic Conditions
- Efficient mixed-force first-principles molecular dynamics
- Energetics of intrinsic point defects in ZrSiO
- Benchmarking van der Waals Density Functionals with Experimental Data: Potential Energy Curves for H2 Molecules on Cu(111), (100), and (110) Surfaces
- Electrical transport through a mechanically gated molecular wire
- Systematic Study of Electron Localization in an Amorphous Semiconductor
- Zigzag equilibrium structure in monatomic wires
- Structural Origins of Conductance Fluctuations in Gold-Thiolate Molecular Transport Junctions
- Electrochemical ferroelectric switching: The origin of polarization reversal in ultrathin films
- Interstellar ice analogs: band strengths of HO, CO, CHOH, and NH in the far-infrared region
- Size effects in surface reconstructed and silicon nanowires
- Stochastic density functional theory
- Foundations of ab initio simulations of electric charges and fields at semiconductor surfaces within slab models
- XPS and DFT study of Sn incorporation into ZnO and TiO2 host matrices by pulsed ion implantation
- First-principles calculations of the vibrational properties of bulk CdSe and CdSe nanowires
- Efficient and reliable method for the simulation of scanning tunneling images and spectra with local basis sets
- Anomalous electron-phonon interaction in doped LaOFeAs: a First Principles calculation
- All electron and pseudopotential study of the spin polarization of the V (001) surface: LDA versus GGA
- The role of vacancies, impurities and crystal structure in the magnetic properties of TiO2
- Ab initio energetics and kinetics study of H_2 and CH_4 in the SI Clathrate Hydrate
- One-dimensional half-metallic interfaces of two-dimensional honeycomb insulators
- Topological superconductivity from magnetic impurities on monolayer NbSe
- On the nature of Surface States Stark Effect at clean GaN(0001) surface
- Surface dangling bond states and band-lineups in hydrogen-terminated Si, Ge, and Ge/Si nanowires
- Evaluation of Exchange-Correlation Energy, Potential, and Stress
- Hydrogenated grain boundaries in graphene
- Experimentally Constrained Molecular Relaxation: The case of hydrogenated amorphous silicon
- Fluorographynes: Stability, Structural and Electronic Properties
- Ab initio calculations of edge-functionalized armchair graphene nanoribbons: Structural, electronic, and vibrational effects
- A theoretical study of the dynamics of atomic hydrogen on graphene bilayers
- Momentum-resolved TDDFT algorithm in atomic basis for real time tracking of electronic excitation
- Carbon cage-like materials as potential low work function metallic compounds: Case of clathrates
- Efficient Recursion Method for Inverting Overlap Matrix
- Current-induced energy barrier suppression for electromigration from first principles
- Interplay between p- and d- orbitals yields multiple Dirac states in one- and two-dimensional CrB4
- Tuning Penta-Graphene Electronic Properties Through Engineered Line Defects
- Elastic Properties of Functionalized Carbon Nanotubes
- Intrinsic point defects and volume swelling in ZrSiO4 under irradiation
- Current rectification in molecular junctions produced by local potential fields
- Orientation-dependent stability and quantum-confinement effects of silicon carbide nanowires
- Parallel, linear-scaling building-block and embedding method based on localized orbitals and orbital-specific basis sets
- Effect of atomic-scale defects and dopants on phosphorene electronic structure and quantum transport properties
- PASTA: Python Algorithms for Searching Transition stAtes
- Defects in ultrathin copper nanowires
- Pressure induced magnetism in rotated graphene bilayers
- Electronic and Magnetic Properties of Zigzag Boron-Nitride Nanoribbons with Even and Odd-line Stone-Wales (5-7 pair) Defects
- Band gap control of small bundles of carbon nanotubes using applied electric fields: A density functional theory study
- Real space information from Fluctuation electron microscopy: Applications to amorphous silicon
- Electronic and Nuclear Quantum Effects on the Ice XI/Ice Ih Phase Transition
- Quantum transport through STM-lifted single PTCDA molecules
- Resistive and rectifying effects of pulling gold atoms at thiol-gold nano-contacts
- Correlated hybridization in transition metal complexes
- Inclusion of Experimental Information in First Principles Modeling of Materials
- Proposal of a one-dimensional electron gas in the steps at the LaAlO-SrTiO interface
- Electronic properties of substitutional impurities in graphene-like CN, -CN, and -CN
- Diffusion-reaction mechanisms of nitriding species in SiO2
- Hydrogen dynamics and light-induced structural changes in hydrogenated amorphous silicon
- (Ga,In)P: A standard alloy in the classification of phonon mode behavior
- Electronic structure study by means of X-ray spectroscopy and theoretical calculations of the "ferric star" single molecule magnet
- Strong electron correlations in cobalt valence tautomers
- Selective Hydrogen Adsoprtion in Graphene Rotated Bilayers
- Polarization sensitive surface band structure of doped BaTiO3(001)
- Interference effects in phtalocyanine controlled by H-H tautomerization: a potential two-terminal unimolecular electronic switch
- Local-field effects in silicon nanoclusters
- Non-collinear coupling between magnetic adatoms in carbon nanotubes
- Inelastic electron tunneling spectroscopy for probing strongly correlated many-body systems by scanning tunneling microscopy
- Emergence of Flat-Band Magnetism and Half-Metallicity in Twisted Bilayer Graphene
- Vacancy mediated magnetization and healing of a graphene monolayer
- Structural, magnetic, dielectric and mechanical properties of (Ba,Sr)MnO ceramics
- Effect of electron and hole doping on the structure of C, Si, and S nanowires
- The electronic properties of doped single walled carbon nanotubes and carbon nanotube sensors
- Embedded Boron Nitride Domains In Graphene Nanoribbons For Transport Gap Engineering
- Polarization dependent chemistry of ferroelectric BaTiO3 (001) domains
- Energetics and carrier transport in doped Si/SiO2 quantum dots
- Electronic Properties of Defective MoS Monolayers Subject to Mechanical Deformations: A First-Principles Approach
- Pb chains on reconstructed Si(335) surface
- Electron correlation in the Si(100) surface
- Electronic transport in graphene-based structures: an effective cross section approach
- Proposal for a single-molecule field-effect transistor for phonons
- First principles study of the adsorption of C60 on Si(111)
- Spin-Resolved Self-Doping Tunes the Intrinsic Half-Metallicity of AlN Nanoribbons
- Study of transport properties of a molecular junction as a function of distance between the leads
- Electron-phonon interaction in Fe-based superconductors: Coupling of magnetic moments with phonons in LaFeAsOF
- Nanotube bundles and tube-tube orientation: A van der Waals Density Functional Study
- Noninvasive Embedding of Single Co Atoms in Ge(111)2x1 Surfaces
- Short range repulsive interatomic interactions in energetic processes in solids
- Bistability, softening, and quenching of magnetic moments in Ni-filled carbon nanotubes
- Filtering a distribution simultaneously in real and Fourier space
- Study of the One- and Two-Band Models for Colossal Magnetoresistive Manganites Using the Truncated Polynomial Expansion Method
- Silicene on metallic quantum wells - an efficient way of tuning silicene-substrate interaction
- Angle-dependent electron confinement in graphene moiré superlattices
- On the Kohn--Sham density response in a localized basis set
- Vibrationally induced flip motion of a hydroxyl dimer on Cu(110)
- General aspects of the vapor growth of semiconductor crystals - a study based on DFT simulations of the NH3/NH2 covered GaN(0001) surface in hydrogen ambient
- Half-Metallic Silicon Nanowires: Multiple Surface Dangling Bonds and Nonmagnetic Doping
- Nematicity of correlated systems driven by anisotropic chemical phase separation
- Structure and vibrational properties of the PTCDA/Ag(111) interface: Bilayer vs. monolayer
- Simulating nuclear and electronic quantum effects in enzymes
- Electronic Transport Properties of Chemically Modified Double-Walled Carbon Nanotubes
- Electronic transport in BN-substituted bilayer graphene nano-junctions
- The Influence of Silicon Nanoclusters on the Optical Properties of a-SiNx Samples: A Theoretical Study
- Mechano-switching devices from carbon wire-carbon nanotube junctions
- Charging energy spectrum of black phosphorus quantum dots
- Separate-path electron and hole transport across pi-stacked ferroelectrics for photovoltaic applications
- A DFT study on the electronic and magnetic properties of triangular graphene antidot lattices
- Plane-Wave-Based Stochastic-Deterministic Density Functional Theory for Extended Systems
- First principles study of Si(335)-Au surface
- Tuning Magnetic Properties of Penta-Graphene Bilayers Through Doping with Boron and Oxygen
- A stacking-fault based microscopic model for platelets in diamond
- Electron-Phonon Interactions in C-derived Molecular Solids
- Ab initio calculations for the tetragonal PbZr0.5Ti0.5O3
- Local-fields and disorder effects in free-standing and embedded Si nanocrystallites
- Coherent electron transport in a helical nanotube
- Performance of local orbital basis sets in the self-consistent Sternheimer method for dielectric matrices of extended systems
- Electronic and Quantum Transport Properties of Substitutionally Doped Double-Walled Carbon Nanotubes
- Fast construction of the Kohn--Sham response function for molecules
- Theoretical Study of Magnetic Moments Induced by Defects at the SiC (110) Surface
- Doping of C-induced electronic states in BN nanopeapods
- Adsorption geometry and electronic properties of flat-lying monolayers of tetracene on the Ag(111) surface
- Energetic, electronic and magnetic properties of Mn-dimers on reconstructed (001) GaAs surfaces
- An Anderson Impurity Model for Efficient Sampling of Adiabatic Potential Energy Surfaces of Transition Metal Complexes
- Atomistic modeling of amorphous silicon carbide: An approximate first-principles study in constrained solution space
- Electronic transport in Si:P delta-doped wires
- CVD Formation of Graphene on SiC Surface in Argon Atmosphere
- Structural and Electronic Properties of Defective AlN/GaN Hybrid Nanostrutures
- Electronic transport calculations for rough interfaces in Al, Cu, Ag, and Au
- Thermoelectric Properties of Silicon Carbide Nanowires with Nitrogen Dopants and Vacancies
- Mechanical Properties and Fracture Patterns of Pentagraphene Membranes
- Conditions for the occurrence of Coulomb blockade in phosphorene quantum dots at room temperature
- Modular implementation of the linear and cubic-scaling orbital minimization methods in electronic structure codes using atomic orbitals
- Effects of Edge Passivations on the Electronic and Magnetic Properties of Zigzag Boron-Nitride Nanoribbons with Even and Odd-Line Stone-Wales (5-7 Pair) Defects
- Optimal Fourier filtering of a function that is strictly confined within a sphere
- Semi-metallicity and electron-hole liquid in two-dimensional C and BN based compounds
- Relation between dispersion lines and conductance of telescoped armchair double-wall nanotubes analyzed using perturbation formulas and first-principles calculations
- PtSi Clustering In Silicon Probed by Transport Spectroscopy
- Effect of Interfacial Defects on the Electronic Properties of MoS Based Lateral T-H Heterophase Junctions
- Atomic Confinement Potentials and the Generation of Numerical Atomic Orbitals
- Elastic Properties of Graphyne-based Nanotubes
- The influence of Gaussian strain on sublattice selectivity of impurities in graphene
- Density-Functional Theory Study of Hydrogen Induced Platelets (HIPs) in Silicon
- Plane-wave many-body corrections to the conductance in bulk tunnel junctions
- Prediction of Atomization Energies of Au13+ Clusters through the Machine Learning Approach
- Local structure of Fe impurity atoms in ZnO: bulk versus surface
- Gate control of spin-polarized conductance in alloyed transition metal nano-contacts
- Species Fractionation in Atomic Chains from Mechanically Stretched Alloys
- Hydrogen crystals reduce dissipation in superconducting resonators
- Excitation transport in quantum devices: analytical time-dependent non-equilibrium green function algorithm
- Gas adsorption effects on electronic and magnetic properties of triangular graphene antidot lattices
- Secondary phase Cu2SnSe3 vs. kesterite Cu2ZnSnSe4: similarities and differences in lattice vibration modes
- Démixtion et ségrégation superficielle dans les alliages fer-chrome
- Nitrogen clusters inside C60 cage and new nanoscale energetic materials
- Electronic and Magnetic Properties of Small Fullerene Carbon Nanobuds: A DFT Study
- Nanotube caps on Ni, Fe, and NiFe nano particles: A path to chirality selective growth
- Ab-initio calculations of magnetic and optical properties of 3x3 supercell of TiX (X = S, Se and Te) compounds under the effect of externally applied electric field and strain
- Magnetic interactions in Cu-containing heterospin polymer
- Electronic Transport through DNA Nucleotides in a BC Nanogap for Rapid DNA Sequencing