1.7k citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Center for Systems Biology DresdenDE64 papers
- Max Planck Institute for the Physics of Complex SystemsDE56 papers
- Technische Universität DresdenDE48 papers
- Physics of LifeDE17 papers
- Max Planck SocietyDE14 papers
- Centre National de la Recherche ScientifiqueFR12 papers
- Center for Advancing Electronics DresdenDE7 papers
- University of CambridgeGB7 papers
- Biotechnologisches ZentrumDE5 papers
- University of OxfordGB5 papers
- Harvard UniversityUS4 papers
- Howard Hughes Medical InstituteUS4 papers
135 papers
Event-based spatiotemporal networks for modelling emergent phenomena in complex systems
Matthijs Romeijnders, Michiel van Boven, Francesco Corman +3
Complex systems display emergent phenomena that vary significantly across spatial and temporal scales. These variations originate from fine-grained system processes, yet arriving a…
Mumford-type Shimura curves contained in the Torelli locus
Thomas Bouchet, Jeroen Hanselman, Andreas Pieper +1
In this article we give explicit equations for two Shimura families of genus 4 curves whose Jacobians are abelian fourfolds of Mumford type. These are the first explicit examples o…
TopoSPAM: Topology grounded Simulation Platform for morphogenesis and biological Active Matter
Abhinav Singh, Abhijeet Krishna, Aboutaleb Amiri +11
We present a topology grounded, multiscale simulation platform for morphogenesis and biological active matter. Morphogenesis and biological active matter represent keystone problem…
Elasticity and plasticity of epithelial gap closure
Maryam Setoudeh, Pierre A. Haas
Epiboly, during which a tissue closes around the surface of the egg, pervades animal development. This epithelial gap closure involves cell intercalations at the edge of the gap. H…
Control of lumen morphology by lateral and basal cell surfaces
Chandraniva Guha Ray, Markus Mukenhirn, Alf Honigmann +1
Across development, the morphology of fluid-filled lumina enclosed by epithelial tissues arises from an interplay of lumen pressure, mechanics of the cell cortex, and cell-cell adh…
Probabilistic algorithm for computing all local minimizers of Morse functions on a compact domain
Mohab Safey El Din, Georgy Scholten, Emmanuel Trélat
Let K be the unit-cube in Rn and f\,: K R^n be a Morse function. We assume that the function f is given by an evaluation program in the noisy model, i.e., the eva…
Mesoscale properties of protein clusters determine the size and nature of liquid-liquid phase separation (LLPS)
Gonen Golani, Manas Seal, Mrityunjoy Kar +3
The observation of Liquid-Liquid Phase Separation (LLPS) in biological cells has dramatically shifted the paradigm that soluble proteins are uniformly dispersed in the cytoplasm or…
Spiking Neural Models for Decision-Making Tasks with Learning
Sophie Jaffard, Giulia Mezzadri, Patricia Reynaud-Bouret +1
In cognition, response times and choices in decision-making tasks are commonly modeled using Drift Diffusion Models (DDMs), which describe the accumulation of evidence for a decisi…
Measurements of molecular size and shape on a chip
Xin Zhu, Timothy JD Bennett, Konstantin C Zouboulis +6
Size and shape are critical discriminators between molecular species and states. We describe a micro-chip based high-throughput imaging approach offering rapid and precise determin…
State- versus Reaction-Based Information Processing in Biochemical Networks
Anne-Lena Moor, Age Tjalma, Manuel Reinhardt +2
Trajectory mutual information is frequently used to quantify information transfer in biochemical systems. Tractable solutions of the trajectory mutual information can be obtained v…
Geometry of T1 transitions in epithelia
Pierre A. Haas
The flows of tissues of epithelial cells often involve T1 transitions. These neighbour exchanges are irreversible rearrangements crossing an energy barrier. Here, by an exact geome…
Euler buckling on curved surfaces
Shiheng Zhao, Pierre A. Haas
Euler buckling epitomises mechanical instabilities: An inextensible straight elastic line buckles under compression when the compressive force reaches a critical value .…
A model for boundary-driven tissue morphogenesis
Daniel S. Alber, Shiheng Zhao, Alexandre O. Jacinto +3
Tissue deformations during morphogenesis can be active, driven by internal processes, or passive, resulting from stresses applied at their boundaries. Here, we introduce the Drosop…
(Un)buckling mechanics of epithelial monolayers under compression
Chandraniva Guha Ray, Pierre A. Haas
When cell sheets fold during development, their apical or basal surfaces constrict and cell shapes approach the geometric singularity in which these surfaces vanish. Here, we revea…
Mechanics of poking a cyst
Shiheng Zhao, Pierre A. Haas
Indentation tests are classical tools to determine material properties. For biological samples such as cysts of cells, however, the observed force-displacement relation cannot be e…
Buckling by disordered growth
Rahul G. Ramachandran, Ricard Alert, Pierre A. Haas
Buckling instabilities driven by tissue growth underpin key developmental events such as the folding of the brain. Tissue growth is disordered due to cell-to-cell variability, but…
Characterising transport in a quantum gas by measuring Drude weights
Philipp Schüttelkopf, Mohammadamin Tajik, Nataliia Bazhan +4
Transport properties play a crucial role in defining materials as insulators, metals, or superconductors. A fundamental parameter in this regard is the Drude weight, which quantify…
Cell divisions imprint long lasting elastic strain fields in epithelial tissues
Ali Tahaei, Romina Pisticello-Gómez, S Suganthan +4
A hallmark of biological tissues, viewed as complex cellular materials, is the active generation of mechanical stresses by cellular processes, such as cell divisions. Each cellular…
Non Equilibrium Transitions in a Polymer Replication Ensemble
Arthur Genthon, Carl D. Modes, Frank Jülicher +1
The fuel-driven process of replication in living systems generates distributions of copied entities with varying degrees of copying accuracy. Here we introduce a thermodynamically…
1D Landau-Ginzburg Superpotential of Big Quantum Cohomology of
Guilherme F. Almeida
Using the inverse period map of the Gauss-Manin connection associated with and the Dubrovin construction of Landau-Ginzburg superpotential for Dub…
iGEM: a model system for team science and innovation
Marc Santolini, Leo Blondel, Megan J. Palmer +5
Teams are a primary source of innovation in science and technology. Rather than examining the lone genius, scholarly and policy attention has shifted to understanding how team inte…
Cut it out: Out-of-plane stresses in cell sheet folding of Volvox embryos
Pierre A. Haas, Stephanie S. M. H. Höhn
The folding of cellular monolayers pervades embryonic development and disease. It results from stresses out of the plane of the tissue, often caused by cell shape changes including…
Active shape control by plants in dynamic environments
Hadrien Oliveri, Derek E. Moulton, Heather A. Harrington +1
Plants are a paradigm for active shape control in response to stimuli. For instance, it is well-known that a tilted plant will eventually straighten vertically, demonstrating the i…
A high-order fully Lagrangian particle level-set method for dynamic surfaces
Lennart J. Schulze, Sachin K. T. Veettill, Ivo F. Sbalzarini
We present a fully Lagrangian particle level-set method based on high-order polynomial regression. This enables closest-point redistancing without requiring a regular Cartesian mes…