output
20042026
most citedCell Detection with Star-convex Polygons

1.7k citations

Showing 2019Show all

9 papers · 1 filter

q-bio.TO2019★ 20 cited

Resilience of three-dimensional sinusoidal networks in liver tissue

Jens Karschau, Andre Scholich, Jonathan Wise +4

Can three-dimensional, microvasculature networks still ensure blood supply if individual links fail? We address this question in the sinusoidal network, a plexus-like microvasculat…

nlin.AO2019

The gift of gab: probing the limits of dynamic concentration-sensing across a network of communicating cells

Mohammadreza Bahadorian, Christoph Zechner, Carl Modes

Many systems in biology and beyond employ collaborative, collective communication strategies for improved efficiency and adaptive benefit. One such paradigm of particular interest…

physics.bio-ph2019★ 5 cited

How to Pare a Pair: Topology Control and Pruning in Intertwined Complex Networks

Felix Kramer, Carl D. Modes

Recent work on self-organized remodeling of vasculature in slime-mold, leaf venation systems and vessel systems in vertebrates has put forward a plethora of potential adaptation me…

q-bio.QM2019★ 4 cited

How to orient cells in micro-cavities for high resolution imaging of cytokinesis and lumen formation

Alka Bhat, Linjie Lu, Chen-Ho Wang +4

Imaging dynamics of cellular morphogenesis with high spatial-temporal resolution in 3D is challenging, due to the low spatial resolution along the optical axis and photo-toxicity.…

cs.CV2019★ 527 cited

Star-convex Polyhedra for 3D Object Detection and Segmentation in Microscopy

Martin Weigert, Uwe Schmidt, Robert Haase +2

Accurate detection and segmentation of cell nuclei in volumetric (3D) fluorescence microscopy datasets is an important step in many biomedical research projects. Although many auto…

eess.IV2019★ 151 cited

Probabilistic Noise2Void: Unsupervised Content-Aware Denoising

Alexander Krull, Tomas Vicar, Florian Jug

Today, Convolutional Neural Networks (CNNs) are the leading method for image denoising. They are traditionally trained on pairs of images, which are often hard to obtain for practi…

cs.GR2019★ 30 cited

scenery: Flexible Virtual Reality Visualization on the Java VM

Ulrik Günther, Tobias Pietzsch, Aryaman Gupta +4

Life science today involves computational analysis of a large amount and variety of data, such as volumetric data acquired by state-of-the-art microscopes, or mesh data from analys…

q-bio.TO2019★ 12 cited

Quantification of Nematic Cell Polarity in Three-dimensional Tissues

André Scholich, Simon Syga, Hernán Morales-Navarrete +9

How epithelial cells coordinate their polarity to form functional tissues is an open question in cell biology. Here, we characterize a unique type of polarity found in liver tissue…

cs.DS2019

Fully-functional bidirectional Burrows-Wheeler indexes

Fabio Cunial, Djamal Belazzougui

Given a string on an alphabet of size , we describe a bidirectional Burrows-Wheeler index that takes bits of space, and that supports the addition \emph{and re…