388 citations · 901 across the 7 of their papers we have counts for
9 papers
Embedding-based Instance Segmentation in Microscopy
Manan Lalit, Pavel Tomancak, Florian Jug
Automatic detection and segmentation of objects in 2D and 3D microscopy data is important for countless biomedical applications. In the natural image domain, spatial embedding-base…
Fully Unsupervised Probabilistic Noise2Void
Mangal Prakash, Manan Lalit, Pavel Tomancak +2
Image denoising is the first step in many biomedical image analysis pipelines and Deep Learning (DL) based methods are currently best performing. A new category of DL methods such…
Leveraging Self-supervised Denoising for Image Segmentation
Mangal Prakash, Tim-Oliver Buchholz, Manan Lalit +3
Deep learning (DL) has arguably emerged as the method of choice for the detection and segmentation of biological structures in microscopy images. However, DL typically needs copiou…
An automated workflow for parallel processing of large multiview SPIM recordings
Christopher Schmied, Peter Steinbach, Tobias Pietzsch +2
Multiview light sheet fluorescence microscopy (LSFM) allows to image developing organisms in 3D at unprecedented temporal resolution over long periods of time. The resulting massiv…
BigDataViewer: Interactive Visualization and Image Processing for Terabyte Data Sets
Tobias Pietzsch, Stephan Saalfeld, Stephan Preibisch +1
The increasingly popular light sheet microscopy techniques generate very large 3D time-lapse recordings of living biological specimen. The necessity to make large volumetric datase…
Efficient Bayesian-based Multi-View Deconvolution
Stephan Preibisch, Fernando Amat, Evangelia Stamataki +4
Light sheet fluorescence microscopy is able to image large specimen with high resolution by imaging the sam- ples from multiple angles. Multi-view deconvolution can significantly i…
An Adaptive Threshold in Mammalian Neocortical Evolution
Eric Lewitus, Iva Kelava, Alex T. Kalinka +2
Expansion of the neocortex is a hallmark of human evolution. However, it remains an open question what adaptive mechanisms facilitated its expansion. Here we show, using gyrencepha…
OpenSPIM - an open access platform for light sheet microscopy
Peter Pitrone, Johannes Schindelin, Luke Stuyvenberg +5
Light sheet microscopy promises to revolutionize developmental biology by enabling live in toto imaging of entire embryos with minimal phototoxicity. We present detailed instructio…
An excess of gene expression divergence on the X chromosome in Drosophila embryos; implications for the faster-X hypothesis
Melek A. Kayserili, Dave T. Gerrard, Pavel Tomancak +1
The X chromosome is present as a single copy in the heterogametic sex, and this hemizygosity is expected to drive unusual patterns of evolution on the X relative to the autosomes.…