output
20042026
most citedCell Detection with Star-convex Polygons

1.7k citations

Showing 2016Show all

11 papers · 1 filter

cond-mat.stat-mech2016★ 39 cited

Eigenvalue Outliers of non-Hermitian Random Matrices with a Local Tree Structure

Izaak Neri, Fernando Lucas Metz

Spectra of sparse non-Hermitian random matrices determine the dynamics of complex processes on graphs. Eigenvalue outliers in the spectrum are of particular interest, since they de…

q-bio.SC2016★ 78 cited

Physical Basis of Large Microtubule Aster Growth

Keisuke Ishihara, Kirill S. Korolev, Timothy J. Mitchison

Microtubule asters - radial arrays of microtubules organized by centrosomes - play a fundamental role in the spatial coordination of animal cells. The standard model of aster growt…

q-bio.TO2016★ 97 cited

Triangles bridge the scales: Quantifying cellular contributions to tissue deformation

Matthias Merkel, Raphaël Etournay, Marko Popović +3

In this article, we propose a general framework to study the dynamics and topology of cellular networks that capture the geometry of cell packings in two-dimensional tissues. Such…

physics.bio-ph2016★ 56 cited

Active dynamics of tissue shear flow

Marko Popović, Amitabha Nandi, Matthias Merkel +4

We present a hydrodynamic theory to describe shear flows in developing epithelial tissues. We introduce hydrodynamic fields corresponding to state properties of constituent cells a…

q-bio.SC2016★ 41 cited

The mitotic spindle in the one-cell C. elegans embryo is positioned with high precision and stability

Jacques Pecreaux, Stefanie Redemann, Zahraa Alayan +5

Precise positioning of the mitotic spindle is important for specifying the plane of cell division, which in turn determines how the cytoplasmic contents are partitioned into the da…

cs.DS2016★ 6 cited

Faster Average Case Low Memory Semi-External Construction of the Burrows-Wheeler Transform

German Tischler

The Burrows Wheeler transform has applications in data compression as well as full text indexing. Despite its important applications and various existing algorithmic approaches the…

physics.bio-ph2016★ 200 cited

Stochastic resetting in backtrack recovery by RNA polymerases

Édgar Roldán, Ana Lisica, Daniel Sánchez-Taltavull +1

Transcription is a key process in gene expression, in which RNA polymerases produce a complementary RNA copy from a DNA template. RNA polymerization is frequently interrupted by ba…

cond-mat.stat-mech2016★ 103 cited

Statistics of Infima and Stopping Times of Entropy Production and Applications to Active Molecular Processes

Izaak Neri, Édgar Roldán, Frank Jülicher

We study the statistics of infima, stopping times and passage probabilities of entropy production in nonequilibrium steady states, and show that they are universal. We consider two…

physics.bio-ph2016★ 493 cited

Growth and Division of Active Droplets: A Model for Protocells

David Zwicker, Rabea Seyboldt, Christoph A. Weber +2

It has been proposed that during the early steps in the origin of life, small droplets could have formed via the segregation of molecules from complex mixtures by phase separation.…

physics.bio-ph2016★ 54 cited

Model for probing membrane-cortex adhesion by micropipette aspiration and fluctuation spectroscopy

Ricard Alert, Jaume Casademunt, Jan Brugués +1

We propose a model for membrane-cortex adhesion which couples membrane deformations, hydrodynamics and kinetics of membrane-cortex ligands. In its simplest form, the model gives ex…

cs.DS2016

Low Space External Memory Construction of the Succinct Permuted Longest Common Prefix Array

German Tischler

The longest common prefix (LCP) array is a versatile auxiliary data structure in indexed string matching. It can be used to speed up searching using the suffix array (SA) and provi…