198 citations
- Freie Universität BerlinDE5 papers
- Max Planck SocietyDE4 papers
- Vrije Universiteit AmsterdamNL4 papers
- Center for Theoretical Biological PhysicsUS3 papers
- University of CologneDE3 papers
- Centre National de la Recherche ScientifiqueFR2 papers
- Institute for Atomic and Molecular PhysicsNL2 papers
- Massachusetts Institute of TechnologyUS2 papers
- Mathématiques et Informatique Appliquées du Génome à l'EnvironnementFR2 papers
- Stanford UniversityUS2 papers
- University of California San DiegoUS2 papers
- University of GöttingenDE2 papers
23 papers
Topological data analysis of truncated contagion maps
Florian Klimm
The investigation of dynamical processes on networks has been one focus for the study of contagion processes. It has been demonstrated that contagions can be used to obtain informa…
Coarse Graining Molecular Dynamics with Graph Neural Networks
Brooke E. Husic, Nicholas E. Charron, Dominik Lemm +9
Coarse graining enables the investigation of molecular dynamics for larger systems and at longer timescales than is possible at atomic resolution. However, a coarse graining model…
Control Strategy Identification via Trap Spaces in Boolean Networks
Laura Cifuentes Fontanals, Elisa Tonello, Heike Siebert
The control of biological systems presents interesting applications such as cell reprogramming or drug target identification. A common type of control strategy consists in a set of…
Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction
Edgar Steiger, Martin Vingron
We present a Bayesian method for feature selection in the presence of grouping information with sparsity on the between- and within group level. Instead of using a stochastic algor…
Optimum Search Schemes for Approximate String Matching Using Bidirectional FM-Index
Kiavash Kianfar, Christopher Pockrandt, Bahman Torkamandi +2
Finding approximate occurrences of a pattern in a text using a full-text index is a central problem in bioinformatics and has been extensively researched. Bidirectional indices hav…
Reply to Comment on "Anomalous Discontinuity at the Percolation Critical Point of Active Gels"
M. Sheinman, A. Sharma, F. C. MacKintosh
In this reply we discuss definition and estimation of the Fisher exponent in the no-enclaves percolation (NEP) model.