12 citations · 27 across the 7 of their papers we have counts for
7 papers
Fidelity of Hyperbolic Space for Bayesian Phylogenetic Inference
Matthew Macaulay, Aaron E. Darling, Mathieu Fourment
Bayesian inference for phylogenetics is a gold standard for computing distributions of phylogenies. It faces the challenging problem of. moving throughout the high-dimensional spac…
Online Bayesian phylogenetic inference: theoretical foundations via Sequential Monte Carlo
Vu Dinh, Aaron E. Darling, Frederick A. Matsen
Phylogenetics, the inference of evolutionary trees from molecular sequence data such as DNA, is an enterprise that yields valuable evolutionary understanding of many biological sys…
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
David Coil, Guillaume Jospin, Aaron E. Darling
Motivation: Open-source bacterial genome assembly remains inaccessible to many biologists due to its complexity. Few software solutions exist that are capable of automating all ste…
Proceedings of the 13th Workshop on Algorithms in Bioinformatics (WABI2013)
Aaron Darling, Jens Stoye
These are the proceedings of the 13th Workshop on Algorithms in Bioinformatics, WABI2013, which was held September 2-4 2013 in Sophia Antipolis, France. All manuscripts were peer r…
Hidden breakpoints in genome alignments
Birte Kehr, Knut Reinert, Aaron E. Darling
During the course of evolution, an organism's genome can undergo changes that affect the large-scale structure of the genome. These changes include gene gain, loss, duplication, ch…
Progressive Mauve: Multiple alignment of genomes with gene flux and rearrangement
Aaron E. Darling, Bob Mau, Nicole T. Perna
Multiple genome alignment remains a challenging problem. Effects of recombination including rearrangement, segmental duplication, gain, and loss can create a mosaic pattern of homo…