output
20112017
most citedThe rise and fall of the Phytophthora infestans lineage that triggered the Irish potato famine

445 citations

26 papers

q-bio.QM2017★ 22 cited

Population-specific design of de-immunized protein biotherapeutics

Benjamin Schubert, Charlotta Schärfe, Pierre Dönnes +3

Immunogenicity is a major problem during the development of biotherapeutics since it can lead to rapid clearance of the drug and adverse reactions. The challenge for biotherapeutic…

q-bio.PE2016

Establishment and stability of the latent HIV-1 DNA reservoir

Johanna Brodin, Fabio Zanini, Lina Thebo +4

HIV-1 infection currently cannot be cured because the virus persists as integrated proviral DNA in long-lived cells despite years of suppressive antiretroviral therapy (ART). To ch…

q-bio.PE2016★ 3 cited

In-vivo mutation rates and fitness landscape of HIV-1

Fabio Zanini, Vadim Puller, Johanna Brodin +2

Mutation rates and fitness costs of deleterious mutations are difficult to measure in vivo but essential for a quantitative understanding of evolution. Using whole genome deep sequ…

q-bio.PE2015★ 265 cited

Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses

Richard A. Neher, Trevor Bedford, Rodney S. Daniels +2

Human seasonal influenza viruses evolve rapidly, enabling the virus population to evade immunity and re-infect previously infected individuals. Antigenic properties are largely det…

q-bio.PE2015★ 282 cited

Population genomics of intrapatient HIV-1 evolution

Fabio Zanini, Johanna Brodin, Lina Thebo +4

Many microbial populations rapidly adapt to changing environments with multiple variants competing for survival. To quantify such complex evolutionary dynamics in vivo, time resolv…

physics.optics2014★ 64 cited

High contrast imaging of reversibly switchable fluorescent proteins via temporally unmixed Multispectral Optoacoustic Tomography (tuMSOT)

Andre C Stiel, X Luis Dean-Ben, Yuanyuan Jiang +3

Photocontrol of reversibly switchable fluorescent proteins (RSFPs) was used to program optoacoustic signal time courses that were temporally unmixed to increase the proteins contra…