265 citations · 536 across the 5 of their papers we have counts for
5 papers
Cellular reproduction number, generation time and growth rate differ between human- and avian-adapted influenza strains
Ada W. C. Yan, Jie Zhou, Catherine A. A. Beauchemin +3
When analysing in vitro data, growth kinetics of influenza strains are often compared by computing their growth rates, which are sometimes used as proxies for fitness. However, ana…
Prediction, dynamics, and visualization of antigenic phenotypes of seasonal influenza viruses
Richard A. Neher, Trevor Bedford, Rodney S. Daniels +2
Human seasonal influenza viruses evolve rapidly, enabling the virus population to evade immunity and re-infect previously infected individuals. Antigenic properties are largely det…
Predicting evolution from the shape of genealogical trees
Richard A. Neher, Colin A. Russell, Boris I. Shraiman
Given a sample of genome sequences from an asexual population, can one predict its evolutionary future? Here we demonstrate that the branching patterns of reconstructed genealogica…
Integrating influenza antigenic dynamics with molecular evolution
Trevor Bedford, Marc A. Suchard, Philippe Lemey +7
Influenza viruses undergo continual antigenic evolution allowing mutant viruses to evade host immunity acquired to previous virus strains. Antigenic phenotype is often assessed thr…
The seasonal flight of influenza: a unified framework for spatiotemporal hypothesis testing
Philippe Lemey, Andrew Rambaut, Trevor Bedford +8
Global mobility flow data are at the heart of spatial epidemiological models used to predict infectious disease behavior but this wealth of data on human mobility has been largely…