Colloquium: Criticality and dynamical scaling in living systems
arXiv:1712.04499 · doi:10.1103/RevModPhys.90.031001
Abstract
A celebrated and controversial hypothesis conjectures that some biological systems --parts, aspects, or groups of them-- may extract important functional benefits from operating at the edge of instability, halfway between order and disorder, i.e. in the vicinity of the critical point of a phase transition. Criticality has been argued to provide biological systems with an optimal balance between robustness against perturbations and flexibility to adapt to changing conditions, as well as to confer on them optimal computational capabilities, huge dynamical repertoires, unparalleled sensitivity to stimuli, etc. Criticality, with its concomitant scale invariance, can be conjectured to emerge in living systems as the result of adaptive and evolutionary processes that, for reasons to be fully elucidated, select for it as a template upon which higher layers of complexity can rest. This hypothesis is very suggestive as it proposes that criticality could constitute a general and common organizing strategy in biology stemming from the physics of phase transitions. However, despite its thrilling implications, this is still in its embryonic state as a well-founded theory and, as such, it has elicited some healthy skepticism. From the experimental side, the advent of high-throughput technologies has created new prospects in the exploration of biological systems, and empirical evidence in favor of criticality has proliferated, with examples ranging from endogenous brain activity and gene-expression patterns, to flocks of birds and insect-colony foraging, to name but a few...
To appear in REVIEW OF MODERN PHYSICS
References in corpus (177)
- Emergence of scaling in random networks
- Statistical mechanics of complex networks
- The structure and function of complex networks
- Power-law distributions in empirical data
- Novel type of phase transition in a system of self-driven particles
- Power laws, Pareto distributions and Zipf's law
- Hierarchical organization of modularity in metabolic networks
- Epidemic processes in complex networks
- Synchronization in complex networks
- Evolution of networks
- Collective motion
- The origin of bursts and heavy tails in human dynamics
- The scaling laws of human travel
- Critical phenomena in complex networks
- Interaction Ruling Animal Collective Behaviour Depends on Topological rather than Metric Distance: Evidence from a Field Study
- The Mechanics and Statistics of Active Matter
- Weak pairwise correlations imply strongly correlated network states in a neural population
- Nonequilibrium Critical Phenomena and Phase Transitions into Absorbing States
- Multifractality in Human Heartbeat Dynamics
- Emergent complex neural dynamics
- Crackling Noise
- The Yeast Cell-Cycle Network Is Robustly Designed
- Scale-free correlations in bird flocks
- Onset of collective and cohesive motion
- Adaptive Coevolutionary Networks: A Review
- Optimal Dynamical Range of Excitable Networks at Criticality
- Statistical mechanics for natural flocks of birds
- Are biological systems poised at criticality?
- Collective motion of self-propelled particles interacting without cohesion
- Long-Term Clustering, Scaling, and Universality in the Temporal Occurrence of Earthquakes
- Dynamical synapses causing self-organized criticality in neural networks
- Criticality in the brain: A synthesis of neurobiology, models and cognition
- Random Boolean Network Models and the Yeast Transcriptional Network
- Brain organization into resting state networks emerges at criticality on a model of the human connectome
- Superfluid transport of information in turning flocks of starlings
- Rare region effects at classical, quantum, and non-equilibrium phase transitions
- Essential nonlinearities in hearing
- Does the 1/f frequency-scaling of brain signals reflect self-organized critical states?
- Auditory Sensitivity Provided by Self-tuned Critical Oscillations of Hair Cells
- Griffiths phases and the stretching of criticality in brain networks
- A Tutorial in Connectome Analysis: Topological and Spatial Features of Brain Networks
- Critical Coarsening without Surface Tension: the Voter Universality Class
- Language Trees and Zipping
- Collective motion and nonequilibrium cluster formation in colonies of gliding bacteria
- Maximum entropy models for antibody diversity
- Paths to Self-Organized Criticality
- Self-Organized Branching Processes: A Mean-Field Theory for Avalanches
- The abelian sandpile and related models
- Emergence of structural and dynamical properties of ecological mutualistic networks
- Life is physics: evolution as a collective phenomenon far from equilibrium
- Local information transfer as a spatiotemporal filter for complex systems
- Searching for collective behavior in a network of real neurons
- Metastable Chimera States in Community-Structured Oscillator Networks
- Critical brain networks
- Topological Evolution of Dynamical Networks: Global Criticality from Local Dynamics
- Self-Organized Criticality model for Brain Plasticity
- Power laws and Self-Organized Criticality in Theory and Nature
- Molecular motors robustly drive active gels to a critically connected state
- Self-sustained asynchronous irregular states and Up/Down states in thalamic, cortical and thalamocortical networks of nonlinear integrate-and-fire neurons
- Zipf's Law in Gene Expression
- Power-law statistics and universal scaling in the absence of criticality
- 25 Years of Self-Organized Criticality: Concepts and Controversies
- Stochastic Models of Evolution in Genetics, Ecology and Linguistics
- Spike Avalanches Exhibit Universal Dynamics across the Sleep-Wake Cycle
- Interacting Individuals Leading to Zipf's Law
- Failure of adaptive self-organized criticality during epileptic seizure attacks
- Information-based fitness and the emergence of criticality in living systems
- Can power-law scaling and neuronal avalanches arise from stochastic dynamics?
- Ising-like dynamics in large-scale functional brain networks
- Social interactions dominate speed control in driving natural flocks toward criticality
- The Physics of the Vicsek Model
- Multiplicative processes and power laws
- Finite-size scaling as a way to probe near-criticality in natural swarms
- Tracer Dispersion in a Self-Organized Critical System
- Absorbing-state phase transitions in fixed-energy sandpiles
- Driving, conservation and absorbing states in sandpiles
- Statistical Mechanics of Ecological Systems: Neutral Theory and Beyond
- Marginally Stable Equilibria in Critical Ecosystems
- On the Origins of Hierarchy in Complex Networks
- Inverse Ising inference using all the data
- Learning as a phenomenon occurring in a critical state
- Adaptive self-organization in a realistic neural network model
- Griffiths phases on complex networks
- Self-similar correlation function in brain resting-state fMRI
- An exact mapping between the Variational Renormalization Group and Deep Learning
- Critical Dynamics of the Contact Process with Quenched Disorder
- Multi-scale community organization of the human structural connectome and its relationship with resting-state functional connectivity
- Self-organization without conservation: true or just apparent scale-invariance?
- Dynamic scaling in natural swarms
- Morphogenesis at criticality?
- Local equilibrium in bird flocks
- Zipf's law and criticality in multivariate data without fine-tuning
- Zipf's law unzipped
- Near-critical fluctuations and cytoskeleton-assisted phase separation lead to subdiffusion in cell membranes
- Critical Scale-invariance in Healthy Human Heart Rate
- The simplest maximum entropy model for collective behavior in a neural network
- Are Damage Spreading Transitions Generically in the Universality Class of Directed Percolation?
- Self-organized criticality and synchronization in a lattice model of integrate-and-fire oscillators
- Mitochondrial network complexity emerges from fission/fusion dynamics
- Individual versus collective cognition in social insects
- Frustrated hierarchical synchronization and emergent complexity in the human connectome network
- Dynamical and Statistical Criticality in a Model of Neural Tissue
- Self-organized Criticality in Living Systems
- Mutual information in random Boolean models of regulatory networks
- The Active Traveling Wave in the Cochlea
- Scaling of waves in the Bak-Tang-Wiesenfeld sandpile model
- Critical Networks Exhibit Maximal Information Diversity in Structure-Dynamics Relationships
- Quasi-Critical Brain Dynamics on a Non-Equilibrium Widom Line
- Sample and population exponents of generalized Taylor's law
- The Cochlear Tuning Curve
- Dynamical criticality in the collective activity of a population of retinal neurons
- Adaptive learning by extremal dynamics and negative feedback
- On sampling and modeling complex systems
- Balanced networks of spiking neurons with spatially dependent recurrent connections
- Self-Organized Bistability Associated With First-Order Phase Transitions
- Spin glass models for a network of real neurons
- On the criticality of inferred models
- Critical fluctuations in proteins native states
- Inter-event correlations from avalanches hiding below the detection threshold
- Study of the disordered one-dimensional contact process
- Criticality in Random Threshold Networks: Annealed Approximation and Beyond
- Neutral theory and scale-free neural dynamics
- The effect of thresholding on temporal avalanche statistics
- Irregular dynamics in up and down cortical states
- Zipf's law, power laws, and maximum entropy
- A simple unified view of branching process statistics: random walks in balanced logarithmic potentials
- Quantum Criticality at the Origin of Life
- The Effect of Nonstationarity on Models Inferred from Neural Data
- Quenched disorder forbids discontinuous transitions in nonequilibrium low-dimensional systems
- Perspectives on theory at the interface of physics and biology
- Signatures of criticality arise in simple neural population models with correlations
- Damage Spreading and Criticality in Finite Random Dynamical Networks
- Emergent Criticality from Co-evolution in Random Boolean Networks
- Emergent Criticality Through Adaptive Information Processing in Boolean Networks
- Emergent self-organized complex network topology out of stability constraints
- A Critical-like Collective State Leads to Long-range Cell Communication in Dictyostelium discoideum Aggregation
- Phase Transitions and Scaling in Systems Far From Equilibrium
- Self-organized criticality in single neuron excitability
- Self-Similarity and Scaling in Forest Communities
- The brain: What is critical about it?
- Criticality in Formal Languages and Statistical Physics
- Re-inventing Willis
- Can dynamical synapses produce true self-organized criticality?
- Single-Neuron Criticality Optimizes Analog Dendritic Computation
- Criticality and the Onset of Ordering in the Standard Vicsek Model
- Critical dynamics in the evolution of stochastic strategies for the iterated Prisoner's Dilemma
- Criticality of mostly informative samples: A Bayesian model selection approach
- Stochastic Amplification of Fluctuations in Cortical Up-states
- Onset of collective motion in locusts is captured by a minimal model
- Quasi-Neutral theory of epidemic outbreaks
- Evolution of Robustness and Plasticity under Environmental Fluctuation: Formulation in terms of Phenotypic Variances
- The perils of thresholding
- Non-genetic heterogeneity criticality and cell differentiation
- Short period attractors and non-ergodic behavior in the deterministic fixed energy sandpile model
- Time-Scale and Noise Optimality in Self-Organized Critical Adaptive Networks
- Auditory power-law activation-avalanches exhibit a fundamental computational ground-state
- Damage Spreading in the Ising Model
- Unveiling causal activity of complex networks
- The window at the edge of chaos in a simple model of gene interaction networks
- Crystallization and melting of bacteria colonies and Brownian Bugs
- Modular Random Boolean Networks
- Universality of biochemical feedback and its application to immune cells
- Critical Boolean networks with scale-free in-degree distribution
- How ants move: individual and collective scaling properties
- Self-organization of heterogeneous topology and symmetry breaking in networks with adaptive thresholds and rewiring
- Microdynamics and Criticality of Adaptive Regulatory Networks
- Dynamical Crossover in a Stochastic Model of Cell Fate Decision
- Robustness Leads Close to the Edge of Chaos in Coupled Map Networks: toward the understanding of biological networks
- Physical approaches to the dynamics of genetic circuits: A tutorial
- Intrinsic noise and deviations from criticality in Boolean gene-regulatory networks
- Cooperation, competition and the emergence of criticality in communities of adaptive systems
- Systems poised to criticality through Pareto selective forces
- Living on the edge of chaos: minimally nonlinear models of genetic regulatory dynamics
- Criticality & Deep Learning II: Momentum Renormalisation Group
- Criticality & Deep Learning I: Generally Weighted Nets
- Critical Percolation as a Framework to Analyze the Training of Deep Networks
- Hopf-type neurons increase input-sensitivity by forming forcing-coupled ensembles
Cited by in corpus (156)
- Inferring change points in the COVID-19 spreading reveals the effectiveness of interventions
- Non-reciprocal phase transitions
- Logic and connectivity jointly determine criticality in biological gene regulatory networks
- Power-law size distributions in geoscience revisited
- Control of criticality and computation in spiking neuromorphic networks with plasticity
- Between perfectly critical and fully irregular: a reverberating model captures and predicts cortical spike propagation
- Adaptive, locally-linear models of complex dynamics
- Self-organization toward criticality by synaptic plasticity
- Searching for collective behavior in a small brain
- Critical Response of a Quantum van der Pol Oscillator
- Feedback mechanisms for self-organization to the edge of a phase transition
- Edge of chaos and avalanches in neural networks with heavy-tailed synaptic weight distribution
- A review of active matter reviews
- A meta-analysis of Boolean network models reveals design principles of gene regulatory networks
- Hybrid-type synchronization transitions: where marginal coherence, scale-free avalanches, and bistability live together
- Time-series thresholding and the definition of avalanche size
- Critical synchronization dynamics of the Kuramoto model on connectome and small world graphs
- Collective predator evasion: Putting the criticality hypothesis to the test
- Epidemic plateau in critical SIR dynamics with non-trivial initial conditions
- Statistical Criticality arises in Most Informative Representations
- Universality, criticality and complexity of information propagation in social media
- Homeostatic plasticity and emergence of functional networks in a whole-brain model at criticality
- Modular architecture facilitates noise-driven control of synchrony in neuronal networks
- Dynamic Adaptive Computation: Tuning network states to task requirements
- Spontaneous vortex formation by microswimmers with retarded attractions
- Synaptic balance due to homeostatically self-organized quasicritical dynamics
- Self-organized critical balanced networks: a unified framework
- Does the brain behave like a (complex) network? I. Dynamics
- Theoretical foundations of studying criticality in the brain
- Finite-size scaling at the edge of disorder in a time-delay Vicsek model
- Testing the critical brain hypothesis using a phenomelogical renormalization group
- Self-organized bistability and its possible relevance for brain dynamics
- Assessing criticality in pre-seizure single-neuron activity of human epileptic cortex
- Disentangling the critical signatures of neural activity
- Tackling the subsampling problem to infer collective properties from limited data
- Critical neuronal models with relaxed timescales separation
- The broad edge of synchronisation: Griffiths effects and collective phenomena in brain networks
- Description of spreading dynamics by microscopic network models and macroscopic branching processes can differ due to coalescence
- Bifurcation and Criticality
- Dynamical phase transitions in the nonreciprocal Ising model
- Microfluidic cell engineering on high-density microelectrode arrays for assessing structure-function relationships in living neuronal networks
- Criticality in Cell Adhesion
- Quantifying Relevance in Learning and Inference
- A bifurcation integrates information from many noisy ion channels
- Heterogeneous excitable systems exhibit Griffiths phases below hybrid phase transitions
- Reservoir Computing based on Quenched Chaos
- Tailored ensembles of neural networks optimize sensitivity to stimulus statistics
- Minimum Description Length codes are critical
- Balancing selfishness and norm conformity can explain human behavior in large-scale Prisoner's Dilemma games and can poise human groups near criticality
- Explosive, continuous and frustrated synchronization transition in spiking Hodgkin-Huxley neuronal networks: the role of topology and synaptic interaction
- MR. Estimator, a toolbox to determine intrinsic timescales from subsampled spiking activity
- Universality of biochemical feedback and its application to immune cells
- Critical phenomena in the temperature-pressure-crowding phase diagram of a protein
- Tracking the distance to criticality in systems with unknown noise
- A devil's advocate view on 'self-organized' brain criticality
- Turing instability in quantum activator-inhibitor systems
- Correlation functions as a tool to study collective behaviour phenomena in biological systems
- Classes of critical avalanche dynamics in complex networks
- Robustness of Griffiths effects in homeostatic connectome models
- Non-Markovian Majority-Vote model
- Signatures of criticality in turning avalanches of schooling fish
- Cell-to-cell information at a feedback-induced bifurcation point
- Universal constraint on nonlinear population dynamics
- Fundamental interactions in self-organized critical dynamics on higher-order networks
- What makes us humans: Differences in the critical dynamics underlying the human and fruit-fly connectome
- Heterogeneity extends criticality
- Homeostatic Criticality in Neuronal Networks
- Dynamically selected steady states and criticality in non-reciprocal networks
- Synchronization transitions on connectome graphs with external force
- Evolution in the Debian GNU/Linux software network: analogies and differences with gene regulatory networks
- Networks with many structural scales: a Renormalization Group perspective
- Breakdown of random matrix universality in Markov models
- Synchronized Attachment and the Darwinian Evolution of Coronaviruses CoV-1 and CoV-2
- Effects of Turbulent Environment and Random Noise on Self-Organized Critical Behavior: Universality vs Nonuniversality
- Chimera states in neural networks and power systems
- Evidence of scale-free clusters of vegetation in tropical rainforests
- Jensen's force and the statistical mechanics of cortical asynchronous states
- Sampling effects and measurement overlap can bias the inference of neuronal avalanches
- Transition between chaotic and stochastic universality classes of kinetic roughening
- Effects of turbulent environment on self-organized critical behavior: Isotropy vs Anisotropy
- Stirred Kardar-Parisi-Zhang equation with quenched random noise: Emergence of induced nonlinearity
- Gaussian statistics as an emergent symmetry of the stochastic Burgers equation
- Learning phase transitions from regression uncertainty: A new regression-based machine learning approach for automated detection of phases of matter
- Multicellular sensing at a feedback-induced critical point
- Modelling on the very large-scale connectome
- Scale-free behavior of weight distributions of connectomes
- Physics of Psychophysics: two coupled square lattices of spiking neurons have huge dynamic range at criticality
- Kardar-Parisi-Zhang universality class in the synchronization of oscillator lattices with time-dependent noise
- Renormalization group analysis of a self-organized critical system: Intrinsic anisotropy vs random environment
- Laser-induced heating for the experimental study of critical Casimir forces with optical trapping
- Dimensional transmutation and nonconventional scaling behaviour in a model of self-organized criticality
- Biases in Inverse Ising Estimates of Near-Critical Behaviour
- Decomposing Thermodynamic Dissipation of Linear Langevin Systems via Oscillatory Modes and Its Application to Neural Dynamics
- Action at a distance in transcriptional regulation
- Spike-Phase Coupling As an Order Parameter in a Leaky Integrate-and-Fire Model
- Functionality of disorder in muscle mechanics
- When to be critical? Performance and evolvability in different regimes of neural Ising agents
- Improved estimation for energy dissipation in biochemical oscillations
- Finite-size scaling of critical avalanches
- Characterizing spreading dynamics of subsampled systems with non-stationary external input
- Consensus formation and relative stimulus perception in quality-sensitive, interdependent agent systems
- Photon waiting time distributions: a keyhole into dissipative quantum chaos
- Order symmetry breaking and broad distribution of events in spiking neural networks with continuous membrane potential
- The dynamical regime and its importance for evolvability, task performance and generalization
- Criticality at work: scaling in the mouse cortex enhances performance
- Mechanisms of self-organized quasicriticality in neuronal networks models
- The precursor of the critical transitions in majority vote model with the noise feedback from the vote layer
- Barrier-Controlled Non-Equilibrium Criticality in Reactive Particle Systems
- Scaling of causal neural avalanches in a neutral model
- Tipping the Balance: a criticality perspective
- Games in rigged economies
- Emergent phenomena in living systems: a statistical mechanical perspective
- Power-law intensity distribution in -decay cascades -- Nuclear Structure as a Scale-Free Random Network
- A generic coupling between internal states and activity leads to activation fronts and criticality in active systems
- Renormalization group study of superfluid phase transition: effect of compressibility
- Extrinsic vs Intrinsic Criticality in Systems with Many Components
- Energy-space random walk in a driven disordered Bose gas
- Universal Scaling Laws of Absorbing Phase Transitions in Artificial Deep Neural Networks
- Visibility graphs of critical and off-critical time series for absorbing state phase transitions
- Nested canalizing functions minimize sensitivity and simultaneously promote criticality
- Random matrix ensemble for the covariance matrix of Ornstein-Uhlenbeck processes with heterogeneous temperatures
- The multiscale self-similarity of the weighted human brain connectome
- Collective decision-making with heterogeneous biases: Role of network topology and susceptibility
- Non-Stationary Critical Phenomena: Expanding The Critical Point
- Searching for long time scales without fine tuning
- Quantifying plasticity: a network-based framework linking structure to dynamical regimes
- Optimal Machine Intelligence at the Edge of Chaos
- The peculiar statistical mechanics of Optimal Learning Machines
- Backtracking activation impacts the criticality of excitable networks
- From reductionism to realism: Holistic mathematical modelling for complex biological systems
- Why collective behaviours self-organise to criticality: A primer on information-theoretic and thermodynamic utility measures
- Interplay between degree and Boolean rules in the stability of Boolean networks
- Hierarchy of chaotic dynamics in random modular networks
- Self-Organized Networks: Darwinian Evolution of Myosin-1
- Online adaptation in robots as biological development provides phenotypic plasticity
- Cell division sets a universal flow geometry in cell layers
- Scaling in simple continued fraction
- Optimal quantum reservoir learning in proximity to universality
- Optimal reinforcement learning near the edge of synchronization transition
- Functional Geometry of Human Connectome and Robustness of Gender Differences
- Criticality in Tissue Homeostasis: Models and Experiments
- 25 years of criticality in neuroscience -- established results, open controversies, novel concepts
- Avalanches in an excitable network
- Extended Yard Sale model of wealth distribution on Erdős-Rényi random networks
- Defining and finding lifelike entities with a lazy filter
- Brain-like features of MemComputing machines
- Multiscale complexity of two-dimensional Ising systems with short-range, ferromagnetic interactions
- Artificial stochastic neural network on the base of double quantum wells
- Maximal Relevance and Optimal Learning Machines
- Emergence of Chimeras States in One-dimensional Ising model with Long-Range Diffusion
- Hierarchy of percolation patterns in a kinetic replication model
- Probing the Local Response of Glass-forming Liquids by Laser Excitations
- Self-Organized Networks, Darwinian Evolution of Self-Organized Networks, Darwinian Evolution of Dynein Rings, Stalks and Stalk Heads
- Quantifying Influence and Information Transfer in a Modified Vicsek Model with Non-reciprocal Interactions
- Evolutionary aspects of Reservoir Computing
- Estimations by stable motions and applications