Spin glass models for a network of real neurons
arXiv:0912.5409
Abstract
Ising models with pairwise interactions are the least structured, or maximum-entropy, probability distributions that exactly reproduce measured pairwise correlations between spins. Here we use this equivalence to construct Ising models that describe the correlated spiking activity of populations of 40 neurons in the salamander retina responding to natural movies. We show that pairwise interactions between neurons account for observed higher-order correlations, and that for groups of 10 or more neurons pairwise interactions can no longer be regarded as small perturbations in an independent system. We then construct network ensembles that generalize the network instances observed in the experiment, and study their thermodynamic behavior and coding capacity. Based on this construction, we can also create synthetic networks of 120 neurons, and find that with increasing size the networks operate closer to a critical point and start exhibiting collective behaviors reminiscent of spin glasses. We examine closely two such behaviors that could be relevant for neural code: tuning of the network to the critical point to maximize the ability to encode diverse stimuli, and using the metastable states of the Ising Hamiltonian as neural code words.
This is an extended version of arXiv:q-bio.NC/0611072
References in corpus (8)
- Identification of direct residue contacts in protein-protein interaction by message passing
- The Ising Model for Neural Data: Model Quality and Approximate Methods for Extracting Functional Connectivity
- Prediction of spatio-temporal patterns of neural activity from pairwise correlations
- Statistical physics of pairwise probability models
- Small-correlation expansions for the inverse Ising problem
- Ising models for networks of real neurons
- Faster solutions of the inverse pairwise Ising problem
- Rediscovering the power of pairwise interactions
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