Correlation functions as a tool to study collective behaviour phenomena in biological systems
arXiv:2107.04420 · doi:10.1088/2632-072X/ac2b06
Abstract
Much of interesting complex biological behaviour arises from collective properties. Important information about collective behaviour lies in the time and space structure of fluctuations around average properties, and two-point correlation functions are a fundamental tool to study these fluctuations. We give a self-contained presentation of definitions and techniques for computation of correlation functions aimed at providing students and researchers outside the field of statistical physics a practical guide to calculating correlation functions from experimental and simulation data. We discuss some properties of correlations in critical systems, and the effect of finite system size, which is particularly relevant for most biological experimental systems. Finally we apply these to the case of the dynamical transition in a simple neuronal model,
arXiv comment31 pages, 10 figures. arXiv admin note: substantial text overlap with arXiv:2002.01750
References in corpus (27)
- Novel type of phase transition in a system of self-driven particles
- Theoretical perspective on the glass transition and amorphous materials
- Weak pairwise correlations imply strongly correlated network states in a neural population
- Emergent complex neural dynamics
- Scale-free correlations in bird flocks
- Are biological systems poised at criticality?
- Theory of Structural Glasses and Supercooled Liquids
- Colloquium: Criticality and dynamical scaling in living systems
- Brain organization into resting state networks emerges at criticality on a model of the human connectome
- Thermodynamic signature of growing amorphous order in glass-forming liquids
- Maximum entropy models for antibody diversity
- Finite-size scaling as a way to probe near-criticality in natural swarms
- Self-similar correlation function in brain resting-state fMRI
- Dynamic scaling in natural swarms
- What kind of noise is brain noise: anomalous scaling behavior of the resting brain activity fluctuations
- Wolff-Type Embedding Algorithms for General Nonlinear -Models
- Critical fluctuations in proteins native states
- Dynamic relaxation of a liquid cavity under amorphous boundary conditions
- A Critical-like Collective State Leads to Long-range Cell Communication in Dictyostelium discoideum Aggregation
- Dynamical renormalization group approach to the collective behaviour of swarms
- Criticality in spreading processes without time-scale separation and the critical brain hypothesis
- Testing statics-dynamics equivalence at the spin-glass transition in three dimensions
- Critical dynamics on a large human Open Connectome network
- Universal and non-universal neural dynamics on small world connectomes: a finite size scaling analysis
- Life at the edge: complexity and criticality in biological function
- Numerical simulations of liquids with amorphous boundary conditions
- Joint assessment of density correlations and fluctuations for analysing spatial tree patterns