output
20062025
most citedIdentification of direct residue contacts in protein-protein interaction by message passing

1.1k citations

Showing q-bio.QMShow all

8 papers · 1 filter

q-bio.QM2025★ 2 cited

Hillclimb-Causal Inference: A Data-Driven Approach to Identify Causal Pathways Among Parental Behaviors, Genetic Risk, and Externalizing Behaviors in Children

Mengman Wei, Qian Peng

Motivation: Externalizing behaviors in children, such as aggression, hyperactivity, and defiance, are influenced by complex interplays between genetic predispositions and environme…

q-bio.QM2020★ 12 cited

Absolute ethanol intake drives ethanol preference in Drosophila

Scarlet J. Park, William W. Ja

Factors that mediate ethanol preference in Drosophila melanogaster are not well understood. A major confound has been the use of diverse methods to estimate ethanol consumption. We…

q-bio.QM2020★ 33 cited

Modeling in the Time of COVID-19: Statistical and Rule-based Mesoscale Models

Ngan Nguyen, Ondrej Strnad, Tobias Klein +8

We present a new technique for rapid modeling and construction of scientifically accurate mesoscale biological models. Resulting 3D models are based on few 2D microscopy scans and…

q-bio.QM2019★ 25 cited

Investigation of the impact of PTMs on the protein backbone conformation

Pierrick Craveur, Tarun Narwani, Joseph Rebehmed +1

Post-Translational Modifications (PTMs) are known to play a critical role in the regulation of the protein functions. Their impact on protein structures, and their link to disorder…

q-bio.QM2019★ 43 cited

In silico prediction of protein flexibility with local structure approach

Tarun Narwani, Catherine Etchebest, Pierrick Craveur +6

Flexibility is an intrinsic essential feature of protein structures, directly linked to their functions. To this day, most of the prediction methods use the crystallographic data (…

q-bio.QM2016★ 155 cited

Neuro-symbolic representation learning on biological knowledge graphs

Mona Alshahrani, Mohammed Asif Khan, Omar Maddouri +3

Motivation: Biological data and knowledge bases increasingly rely on Semantic Web technologies and the use of knowledge graphs for data integration, retrieval and federated queries…