153 citations · 203 across the 7 of their papers we have counts for
7 papers
mcp-proto-okn: Natural-language access to open scientific knowledge graphs through the Model Context Protocol
Peter W. Rose, Benjamin M. Good, Amanda M. Saravia-Butler +7
MCP Server Proto-OKN (mcp-proto-okn) is a Python-based Model Context Protocol server that enables AI assistants to discover, inspect, query and integrate scientific knowledge graph…
Branch: An interactive, web-based tool for testing hypotheses and developing predictive models
Karthik Gangavarapu, Vyshakh Babji, Tobias Meißner +2
Branch is a web application that provides users with no programming with the ability to interact directly with large biomedical datasets. The interaction is mediated through a coll…
Exposing ambiguities in a relation-extraction gold standard with crowdsourcing
Tong Shu Li, Benjamin M. Good, Andrew I. Su
Semantic relation extraction is one of the frontiers of biomedical natural language processing research. Gold standards are key tools for advancing this research. It is challenging…
OntoLoki: an automatic, instance-based method for the evaluation of biological ontologies on the Semantic Web
Benjamin M. Good, Gavin Ha, Chi K. Ho +1
The delineation of logical definitions for each class in an ontology and the consistent application of these definitions to the assignment of instances to classes are important cri…
Microtask crowdsourcing for disease mention annotation in PubMed abstracts
Benjamin M Good, Max Nanis, Andrew I. Su
Identifying concepts and relationships in biomedical text enables knowledge to be applied in computational analyses. Many biological natural language process (BioNLP) projects atte…
The Cure: Making a game of gene selection for breast cancer survival prediction
Benjamin M. Good, Salvatore Loguercio, Obi L. Griffith +3
Motivation: Molecular signatures for predicting breast cancer prognosis could greatly improve care through personalization of treatment. Computational analyses of genome-wide expre…