output
20062025
most citedEnhancing Clinical Concept Extraction with Contextual Embeddings

338 citations

Showing 2023 · cs.CLShow all

7 papers · 2 filters

cs.CL2023★ 2 cited

Use GPT-J Prompt Generation with RoBERTa for NER Models on Diagnosis Extraction of Periodontal Diagnosis from Electronic Dental Records

Yao-Shun Chuang, Xiaoqian Jiang, Chun-Teh Lee +4

This study explored the usability of prompt generation on named entity recognition (NER) tasks and the performance in different settings of the prompt. The prompt generation by GPT…

cs.CL2023★ 57 cited

AE-GPT: Using Large Language Models to Extract Adverse Events from Surveillance Reports-A Use Case with Influenza Vaccine Adverse Events

Yiming Li, Jianfu Li, Jianping He +1

Though Vaccines are instrumental in global health, mitigating infectious diseases and pandemic outbreaks, they can occasionally lead to adverse events (AEs). Recently, Large Langua…

cs.CL2023★ 7 cited

Text Classification of Cancer Clinical Trial Eligibility Criteria

Yumeng Yang, Soumya Jayaraj, Ethan B Ludmir +1

Automatic identification of clinical trials for which a patient is eligible is complicated by the fact that trial eligibility is stated in natural language. A potential solution to…

cs.CL2023★ 60 cited

Identifying and Extracting Rare Disease Phenotypes with Large Language Models

Cathy Shyr, Yan Hu, Paul A. Harris +1

Rare diseases (RDs) are collectively common and affect 300 million people worldwide. Accurate phenotyping is critical for informing diagnosis and treatment, but RD phenotypes are o…

cs.CL2023★ 260 cited

BiomedGPT: A Generalist Vision-Language Foundation Model for Diverse Biomedical Tasks

Kai Zhang, Rong Zhou, Eashan Adhikarla +20

Traditional biomedical artificial intelligence (AI) models, designed for specific tasks or modalities, often exhibit limited flexibility in real-world deployment and struggle to ut…

cs.CL2023★ 172 cited

Benchmarking large language models for biomedical natural language processing applications and recommendations

Qingyu Chen, Yan Hu, Xueqing Peng +18

The rapid growth of biomedical literature poses challenges for manual knowledge curation and synthesis. Biomedical Natural Language Processing (BioNLP) automates the process. While…

cs.CL2023★ 30 cited

Large Language Models for Healthcare Data Augmentation: An Example on Patient-Trial Matching

Jiayi Yuan, Ruixiang Tang, Xiaoqian Jiang +1

The process of matching patients with suitable clinical trials is essential for advancing medical research and providing optimal care. However, current approaches face challenges s…