761 citations
- Centre National de la Recherche ScientifiqueFR49 papers
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11 papers · 1 filter
Benchmark of structured machine learning methods for microbial identification from mass-spectrometry data
Kévin Vervier, Pierre Mahé, Jean-Baptiste Veyrieras +1
Microbial identification is a central issue in microbiology, in particular in the fields of infectious diseases diagnosis and industrial quality control. The concept of species is…
Acousto-electrical speckle pattern in Lorentz force electrical impedance tomography
Pol Grasland-Mongrain, Francois Destrempes, Jean-Martial Mari +5
Ultrasound speckle is a granular texture pattern appearing in ultrasound imaging. It can be used to distinguish tissues and identify pathologies. Lorentz force electrical impedance…
Large-scale Machine Learning for Metagenomics Sequence Classification
Kévin Vervier, Pierre Mahé, Maud Tournoud +2
Metagenomics characterizes the taxonomic diversity of microbial communities by sequencing DNA directly from an environmental sample. One of the main challenges in metagenomics data…
Singular value demodulation of phase-shifted holograms
Fernando Lopes, Michael Atlan
We report on phase-shifted holographic interferogram demodulation by singular value decomposition. Numerical processing of optically-acquired interferograms over several modulation…
Predicting genetic interactions from Boolean models of biological networks
Laurence Calzone, Emmanuel Barillot, Andrei Zinovyev
Genetic interaction can be defined as a deviation of the phenotypic quantitative effect of a double gene mutation from the effect predicted from single mutations using a simple (e.…
Nonlinear Mixed-Effect Models for Prostate-Specific Antigen Kinetics and Link with Survival in the Context of Metastatic Prostate Cancer: a Comparison by Simulation of Two-Stage and Joint Approaches
Soléne Desmée, France Mentré, Christine Veyrat-Follet +1
In metastatic castration-resistant prostate cancer (mCRPC) clinical trials, the assessment of treatment efficacy essentially relies on the time-to-death and the kinetics of prostat…