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- European Bioinformatics InstituteGB18 papers
- University of CambridgeGB14 papers
- The Gurdon InstituteGB10 papers
- University College LondonGB9 papers
- Centre National de la Recherche ScientifiqueFR6 papers
- Wellcome / EPSRC Centre for Interventional and Surgical SciencesGB6 papers
- InsermFR3 papers
- Institute of Science and Technology AustriaAT3 papers
- Institut national de recherche en sciences et technologies du numériqueFR3 papers
- National Center for Tumor DiseasesDE3 papers
- SIB Swiss Institute of BioinformaticsCH3 papers
- Wellcome/MRC Cambridge Stem Cell InstituteGB3 papers
4 papers · 1 filter
TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations
Haiming Tang, Robert D Finn, Paul D Thomas
Summary: TreeGrafter is a new software tool for annotating protein sequences using annotated phylogenetic trees. Cur-rently, the tool provides annotations to Gene Ontology terms, a…
Toward computational cumulative biology by combining models of biological datasets
Ali Faisal, Jaakko Peltonen, Elisabeth Georgii +2
A main challenge of data-driven sciences is how to make maximal use of the progressively expanding databases of experimental datasets in order to keep research cumulative. We intro…
Revisiting the Training of Logic Models of Protein Signaling Networks with a Formal Approach based on Answer Set Programming
Santiago Videla, Carito Guziolowski, Federica Eduati +4
A fundamental question in systems biology is the construction and training to data of mathematical models. Logic formalisms have become very popular to model signaling networks bec…
Optimal Placement of Origins for DNA Replication
Jens Karschau, J. Julian Blow, Alessandro P. S. de Moura
DNA replication is an essential process in biology and its timing must be robust so that cells can divide properly. Random fluctuations in the formation of replication starting poi…