582 citations · 1.2k across the 19 of their papers we have counts for
22 papers
EMBL AI Librarian: Life-Sciences Knowledge Layer for AI Agents
Luigi Sigillo, Matteo Silvestri, Francesco Tabaro +9
The web is increasingly accessed by AI agents rather than humans. Every agent needs knowledge, especially in the life-sciences, where agentic pipelines are growing fast. Access to…
Robust multicellular programs dissect the complex tumor microenvironment and track disease progression in colorectal adenocarcinomas
Loan Vulliard, Teresa Glauner, Sven Truxa +8
Colorectal cancer (CRC) is highly heterogeneous, with five-year survival rates dropping from 90% in localized disease to 15% with distant metastases. Disease progressio…
Benchmarking and Evaluation of AI Models in Biology: Outcomes and Recommendations from the CZI Virtual Cells Workshop
Elizabeth Fahsbender, Alma Andersson, Jeremy Ash +32
Artificial intelligence holds immense promise for transforming biology, yet a lack of standardized, cross domain, benchmarks undermines our ability to build robust, trustworthy mod…
Complementing cell taxonomies with a multicellular functional analysis of tissues
Ricardo Omar Ramirez Flores, Philipp Sven Lars Schäfer, Leonie Küchenhoff +1
The application of single-cell molecular profiling coupled with spatial technologies has enabled charting cellular heterogeneity in reference tissues and in disease. This new wave…
Molecular causality in the advent of foundation models
Sebastian Lobentanzer, Pablo Rodriguez-Mier, Stefan Bauer +1
Correlation is not causation. As simple as this widely agreed-upon statement may seem, scientifically defining causality and using it to drive our modern biomedical research is imm…
AI Competitions and Benchmarks: The life cycle of challenges and benchmarks
Gustavo Stolovitzky, Julio Saez-Rodriguez, Julie Bletz +4
Data Science research is undergoing a revolution fueled by the transformative power of technology, the Internet, and an ever increasing computational capacity. The rate at which so…