742 citations
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5 papers · 1 filter
A Simple Standard for Sharing Ontological Mappings (SSSOM)
Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello +41
Despite progress in the development of standards for describing and exchanging scientific information, the lack of easy-to-use standards for mapping between different representatio…
Cell types and ontologies of the Human Cell Atlas
David Osumi-Sutherland, Chuan Xu, Maria Keays +4
Massive single-cell profiling efforts have accelerated our discovery of the cellular composition of the human body, while at the same time raising the need to formalise this new kn…
Kernel Identification Through Transformers
Fergus Simpson, Ian Davies, Vidhi Lalchand +3
Kernel selection plays a central role in determining the performance of Gaussian Process (GP) models, as the chosen kernel determines both the inductive biases and prior support of…
Dataset Lifecycle Framework and its applications in Bioinformatics
Yiannis Gkoufas, David Yu Yuan
Bioinformatics pipelines depend on shared POSIX filesystems for its input, output and intermediate data storage. Containerization makes it more difficult for the workloads to acces…
A Fresh Look at FAIR for Research Software
Daniel S. Katz, Morane Gruenpeter, Tom Honeyman +6
This document captures the discussion and deliberation of the FAIR for Research Software (FAIR4RS) subgroup that took a fresh look at the applicability of the FAIR Guiding Principl…