2.7k citations · 3.5k across the 7 of their papers we have counts for
8 papers
bia-binder: A web-native cloud compute service for the bioimage analysis community
Craig T. Russell, Jean-Marie Burel, Awais Athar +6
We introduce bia-binder (BioImage Archive Binder), an open-source, cloud-architectured, and web-based coding environment tailored to bioimage analysis that is freely accessible to…
Putative cell type discovery from single-cell gene expression data
Zhichao Miao, Pablo Moreno, Ni Huang +3
We present a novel method for automated identification of putative cell types from single-cell RNA-seq (scRNA-seq) data. By iteratively applying a machine learning approach to an i…
SARS-CoV-2 Entry Genes Are Most Highly Expressed in Nasal Goblet and Ciliated Cells within Human Airways
Waradon Sungnak, Ni Huang, Christophe Bécavin +2
The SARS-CoV-2 coronavirus, the etiologic agent responsible for COVID-19 coronavirus disease, is a global threat. To better understand viral tropism, we assessed the RNA expression…
The importance of transparency and reproducibility in artificial intelligence research
Benjamin Haibe-Kains, George Alexandru Adam, Ahmed Hosny +17
In their study, McKinney et al. showed the high potential of artificial intelligence for breast cancer screening. However, the lack of detailed methods and computer code undermines…
Guidelines for reporting single-cell RNA-Seq experiments
Anja Füllgrabe, Nancy George, Matthew Green +16
Single-cell RNA-Sequencing (scRNA-Seq) has undergone major technological advances in recent years, enabling the conception of various organism-level cell atlassing projects. With i…
Public archives for biological image data
Jan Ellenberg, Jason R Swedlow, Mary Barlow +4
Public data archives are the backbone of modern biological and biomedical research. While archives for biological molecules and structures are well-established, resources for imagi…