200 citations · 326 across the 4 of their papers we have counts for
4 papers
Clustering genes of common evolutionary history
Kevin Gori, Tomasz Suchan, Nadir Alvarez +2
Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage…
Realistic simulations reveal extensive sample-specificity of RNA-seq biases
Botond Sipos, Greg Slodkowicz, Tim Massingham +1
In line with the importance of RNA-seq, the bioinformatics community has produced numerous data analysis tools incorporating methods to correct sample-specific biases. However, few…
Phylogenetic quantification of intra-tumour heterogeneity
Roland F Schwarz, Anne Trinh, Botond Sipos +3
Background: Intra-tumour heterogeneity (ITH) is the result of ongoing evolutionary change within each cancer. The expansion of genetically distinct sub-clonal populations may expla…
Who Watches the Watchmen? An Appraisal of Benchmarks for Multiple Sequence Alignment
Stefano Iantorno, Kevin Gori, Nick Goldman +2
Multiple sequence alignment (MSA) is a fundamental and ubiquitous technique in bioinformatics used to infer related residues among biological sequences. Thus alignment accuracy is…