457 citations · 1.2k across the 12 of their papers we have counts for
12 papers
Federating and querying heterogeneous and distributed Web APIs and triple stores
Tarcisio Mendes de Farias, Christophe Dessimoz, Aaron Ayllon Benitez +3
Today's international corporations such as BASF, a leading company in the crop protection industry, produce and consume more and more data that are often fragmented and accessible…
Bio-SODA: Enabling Natural Language Question Answering over Knowledge Graphs without Training Data
Ana Claudia Sima, Tarcisio Mendes de Farias, Maria Anisimova +4
The problem of natural language processing over structured data has become a growing research field, both within the relational database and the Semantic Web community, with signif…
How Much Does GenoGuard Really "Guard"? An Empirical Analysis of Long-Term Security for Genomic Data
Bristena Oprisanu, Christophe Dessimoz, Emiliano De Cristofaro
Due to its hereditary nature, genomic data is not only linked to its owner but to that of close relatives as well. As a result, its sensitivity does not really degrade over time; i…
Parallel and Scalable Precise Clustering for Homologous Protein Discovery
Stuart Byma, Akash Dhasade, Adrian Altenhoff +2
This paper presents a new, parallel implementation of clustering and demonstrates its utility in greatly speeding up the process of identifying homologous proteins. Clustering is a…
VoIDext: Vocabulary and Patterns for Enhancing Interoperable Datasets with Virtual Links
Tarcisio Mendes de Farias, Kurt Stockinger, Christophe Dessimoz
Semantic heterogeneity remains a problem when interoperating with data from sources of different scopes and knowledge domains. Causes for this challenge are context-specific requir…
Orthology: definitions, inference, and impact on species phylogeny inference
Rosa Fernández, Toni Gabaldón, Christophe Dessimoz
Orthology is a central concept in evolutionary and comparative genomics, used to relate corresponding genes in different species. In particular, orthologs are needed to infer speci…