output
20102026
most citedDirect-coupling analysis of residue co-evolution captures native contacts across many protein families

1.6k citations

researchers with a paper here

Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.

collaborating institutions
Showing 2023Show all

7 papers · 1 filter

q-bio.PE2023★ 5 cited

Effectiveness of probabilistic contact tracing in epidemic containment: the role of super-spreaders and transmission path reconstruction

A. P. Muntoni, F. Mazza, A. Braunstein +2

The recent COVID-19 pandemic underscores the significance of early-stage non-pharmacological intervention strategies. The widespread use of masks and the systematic implementation…

q-bio.QM2023

DCAlign v1.0: Aligning biological sequences using co-evolution models and informed priors

Anna Paola Muntoni, Andrea Pagnani

DCAlign is a new alignment method able to cope with the conservation and the co-evolution signals that characterize the columns of multiple sequence alignments of homologous sequen…

cond-mat.dis-nn2023★ 3 cited

Small-Coupling Dynamic Cavity: a Bayesian mean-field framework for epidemic inference

Alfredo Braunstein, Giovanni Catania, Luca Dall'Asta +3

We present the Small-Coupling Dynamic Cavity (SCDC) method, a novel generalized mean-field approximation for epidemic inference and risk assessment within a fully Bayesian framewor…

physics.soc-ph2023★ 5 cited

Statistical Mechanics of Inference in Epidemic Spreading

Alfredo Braunstein, Louise Budzynski, Matteo Mariani

We investigate the information-theoretical limits of inference tasks in epidemic spreading on graphs in the thermodynamic limit. The typical inference tasks consist in computing ob…

cond-mat.stat-mech2023★ 9 cited

Matrix Product Belief Propagation for reweighted stochastic dynamics over graphs

Stefano Crotti, Alfredo Braunstein

Stochastic processes on graphs can describe a great variety of phenomena ranging from neural activity to epidemic spreading. While many existing methods can accurately describe typ…

cs.DS2023★ 42 cited

A Survey on the Densest Subgraph Problem and Its Variants

Tommaso Lanciano, Atsushi Miyauchi, Adriano Fazzone +1

The Densest Subgraph Problem requires to find, in a given graph, a subset of vertices whose induced subgraph maximizes a measure of density. The problem has received a great deal o…

cond-mat.soft2023★ 2 cited

Sorting of multiple molecular species on cell membranes

A. Piras, E. Floris, L. Dall'Asta +1

Eukaryotic cells maintain their inner order by a hectic process of distillation of molecular factors taking place on the surface of their lipid membranes. To understand the propert…