output
20102026
most citedDirect-coupling analysis of residue co-evolution captures native contacts across many protein families

1.6k citations

Showing 2014Show all

5 papers · 1 filter

cs.GT2014★ 4 cited

Statics and dynamics of selfish interactions in distributed service systems

F. Altarelli, A. Braunstein, L. Dall'Asta

We study a class of games which model the competition among agents to access some service provided by distributed service units and which exhibit congestion and frustration phenome…

q-bio.PE2014★ 32 cited

The zero-patient problem with noisy observations

Fabrizio Altarelli, Alfredo Braunstein, Luca Dall'Asta +2

A Belief Propagation approach has been recently proposed for the zero-patient problem in a SIR epidemics. The zero-patient problem consists in finding the initial source of an epid…

q-bio.QM2014★ 158 cited

Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners

Carlo Baldassi, Marco Zamparo, Christoph Feinauer +4

In the course of evolution, proteins show a remarkable conservation of their three-dimensional structure and their biological function, leading to strong evolutionary constraints o…

q-bio.BM2014★ 96 cited

Improving contact prediction along three dimensions

Christoph Feinauer, Marcin J. Skwark, Andrea Pagnani +1

Correlation patterns in multiple sequence alignments of homologous proteins can be exploited to infer information on the three-dimensional structure of their members. The typical p…

cond-mat.stat-mech2014★ 3 cited

Generalized belief propagation for the magnetization of the simple cubic Ising model

Alessandro Pelizzola

A new approximation of the cluster variational method is introduced for the three-dimensional Ising model on the simple cubic lattice. The maximal cluster is, as far as we know, th…