1.6k citations
Counting papers with at most 25 authors, so collaboration author lists do not stand in for the people here.
- Politecnico di TorinoIT83 papers
- Collegio Carlo AlbertoIT36 papers
- Istituto Nazionale di Fisica Nucleare, Sezione di TorinoIT27 papers
- Sapienza University of RomeIT21 papers
- Centre National de la Recherche ScientifiqueFR19 papers
- Istituto di NanotecnologiaIT19 papers
- National Research CouncilLK16 papers
- Sorbonne UniversitéFR14 papers
- Biologie Computationnelle, Quantitative et SynthétiqueFR12 papers
- École Normale Supérieure - PSLFR10 papers
- Institut de Biologie Paris-SeineFR9 papers
- Istituto Nazionale di Fisica NucleareIT9 papers
9 papers · 1 filter
Effects of confinement on thermal stability and folding kinetics in a simple Ising-like model
Michele Caraglio, Alessandro Pelizzola
In cellular environment, confinement and macromulecular crowding play an important role on thermal stability and folding kinetics of a protein. We have resorted to a generalized ve…
Direct-coupling analysis of residue co-evolution captures native contacts across many protein families
Faruck Morcos, Andrea Pagnani, Bryan Lunt +7
The similarity in the three-dimensional structures of homologous proteins imposes strong constraints on their sequence variability. It has long been suggested that the resulting co…
Stochastic optimization by message passing
Fabrizio Altarelli, Alfredo Braunstein, Abolfazl Ramezanpour +1
Most optimization problems in applied sciences realistically involve uncertainty in the parameters defining the cost function, of which only statistical information is known before…
Efficient data compression from statistical physics of codes over finite fields
Alfredo Braunstein, Farbod Kayhan, Riccardo Zecchina
In this paper we discuss a novel data compression technique for binary symmetric sources based on the cavity method over a Galois Field of order q (GF(q)). We present a scheme of l…
The stochastic matching problem
Fabrizio Altarelli, Alfredo Braunstein, Abolfazl Ramezanpour +1
The matching problem plays a basic role in combinatorial optimization and in statistical mechanics. In its stochastic variants, optimization decisions have to be taken given only s…
Dissecting the Specificity of Protein-Protein Interaction in Bacterial Two-Component Signaling: Orphans and Crosstalks
Andrea Procaccini, Bryan Lunt, Hendrik Szurmant +2
Predictive understanding of the myriads of signal transduction pathways in a cell is an outstanding challenge of systems biology. Such pathways are primarily mediated by specific b…
Palette-colouring: a belief-propagation approach
Alessandro Pelizzola, Marco Pretti, Jort van Mourik
We consider a variation of the prototype combinatorial-optimisation problem known as graph-colouring. Our optimisation goal is to colour the vertices of a graph with a fixed number…
Inference and learning in sparse systems with multiple states
A. Braunstein, A. Ramezanpour, R. Zecchina +1
We discuss how inference can be performed when data are sampled from the non-ergodic phase of systems with multiple attractors. We take as model system the finite connectivity Hopf…
Finding undetected protein associations in cell signaling by belief propagation
M. Bailly-Bechet, C. Borgs, A. Braunstein +4
External information propagates in the cell mainly through signaling cascades and transcriptional activation, allowing it to react to a wide spectrum of environmental changes. High…