269 citations · 1.3k across the 20 of their papers we have counts for
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Accelerating Genome Analysis: A Primer on an Ongoing Journey
Mohammed Alser, Zülal Bingöl, Damla Senol Cali +4
Genome analysis fundamentally starts with a process known as read mapping, where sequenced fragments of an organism's genome are compared against a reference genome. Read mapping i…
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
Damla Senol Cali, Gurpreet S. Kalsi, Zülal Bingöl +13
Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. U…
Technology dictates algorithms: Recent developments in read alignment
Mohammed Alser, Jeremy Rotman, Kodi Taraszka +13
Massively parallel sequencing techniques have revolutionized biological and medical sciences by providing unprecedented insight into the genomes of humans, animals, and microbes. M…