269 citations · 1.3k across the 20 of their papers we have counts for
Showing 2018Show all
2 papers · 1 filter
cs.CE2018★ 88 cited
Shouji: A Fast and Efficient Pre-Alignment Filter for Sequence Alignment
Mohammed Alser, Hasan Hassan, Akash Kumar +2
Motivation: The ability to generate massive amounts of sequencing data continues to overwhelm the processing capability of existing algorithms and compute infrastructures. In this…
cs.DS2018★ 111 cited
Fast Characterization of Segmental Duplications in Genome Assemblies
Ibrahim Numanagić, Alim S. Gökkaya, Lillian Zhang +3
Segmental duplications (SDs), or low-copy repeats (LCR), are segments of DNA greater than 1 Kbp with high sequence identity that are copied to other regions of the genome. SDs are…