2 papers
cs.DS2023
Pairwise sequence alignment with block and character edit operations
Ahmet Cemal Alıcıoğlu, Can Alkan
Pairwise sequence comparison is one of the most fundamental problems in string processing. The most common metric to quantify the similarity between sequences S and T is edit dista…
cs.LG2022
CoViT: Real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers
Zuher Jahshan, Can Alkan, Leonid Yavits
Real-time viral genome detection, taxonomic classification and phylogenetic analysis are critical for efficient tracking and control of viral pandemics such as Covid-19. However, t…