1 citations · 1 across the 3 of their papers we have counts for
3 papers
FASTR: Reimagining FASTQ via Compact Image-inspired Representation
Adrian Tkachenko, Sepehr Salem, Ayotomiwa Ezekiel Adeniyi +7
Motivation: High-throughput sequencing (HTS) enables population-scale genomics but generates massive datasets, creating bottlenecks in storage, transfer, and analysis. FASTQ, the s…
GateSeeder: Near-memory CPU-FPGA Acceleration of Short and Long Read Mapping
Julien Eudine, Mohammed Alser, Gagandeep Singh +2
Motivation: Read mapping is a computationally expensive process and a major bottleneck in genomics analyses. The performance of read mapping is mainly limited by the performance of…
CoViT: Real-time phylogenetics for the SARS-CoV-2 pandemic using Vision Transformers
Zuher Jahshan, Can Alkan, Leonid Yavits
Real-time viral genome detection, taxonomic classification and phylogenetic analysis are critical for efficient tracking and control of viral pandemics such as Covid-19. However, t…