17 citations · 32 across the 3 of their papers we have counts for
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2 papers · 1 filter
q-bio.GN2017★ 17 cited
GRIM-filter: fast seed filtering in read mapping using emerging memory technologies
Jeremie S Kim, Damla Senol, Hongyi Xin +7
Motivation: Seed filtering is critical in DNA read mapping, a process where billions of DNA fragments (reads) sampled from a donor are mapped onto a reference genome to identify ge…
q-bio.GN2017★ 13 cited
MAGNET: Understanding and Improving the Accuracy of Genome Pre-Alignment Filtering
Mohammed Alser, Onur Mutlu, Can Alkan
In the era of high throughput DNA sequencing (HTS) technologies, calculating the edit distance (i.e., the minimum number of substitutions, insertions, and deletions between a pair…