44 citations · 157 across the 58 of their papers we have counts for
60 papers
MRIComp4Flow: Compression of 3D Brain MRI for Training Multi-Modal Generative Models
Lisa K. Fischer, Mykhailo Riabets, Daniel Rueckert +3
Large-scale multi-modal MRI datasets impose substantial storage and I/O costs, limiting the training of 3D generative models on commodity infrastructure. While lossy compression is…
Multimodal Graph-based Classification of Esophageal Motility Disorders
Alexander Geiger, Lars Wagner, Daniel Rueckert +3
Diagnosing esophageal motility disorders pose significant challenges due to the complexity of high-resolution impedance manometry (HRIM) data and variability in clinical interpreta…
RealICU: Do LLM Agents Understand Long-Context ICU Data? A Benchmark Beyond Behavior Imitation
Chengzhi Shen, Weixiang Shen, Tobias Susetzky +7
Intensive care units (ICU) generate long, dense and evolving streams of clinical information, where physicians must repeatedly reassess patient states under time pressure, undersco…
What Cohort INRs Encode and Where to Freeze Them
Vasiliki Sideri-Lampretsa, Sophie Starck, Robbie Holland +2
Reusing the early layers of cohort-trained INRs as initialization for new signals has been shown to accelerate and improve signal fitting, yet it remains unclear which layers of th…
One Sequence to Segment Them All: Efficient Data Augmentation for CT and MRI Cross-Domain 3D Spine Segmentation
Nathan Molinier, Hendrik Möller, Thomas Dagonneau +6
Deep learning-based medical image segmentation is increasingly used to support clinical diagnosis and develop new treatment strategies. However, model performance remains limited b…
Inpainting physics: self-supervised learning for context-driven fluid simulation
Jonas Weidner, Yeray Martin-Ruisanchez, Daniel Rueckert +2
Neural surrogate models for computational fluid dynamics (CFD) are typically trained as forward operators that map explicit problem specifications, such as geometry and boundary co…
Evaluating the Impact of Medical Image Reconstruction on Downstream AI Fairness and Performance
Matteo Wohlrapp, Niklas Bubeck, Daniel Rueckert +1
AI-based image reconstruction models are increasingly deployed in clinical workflows to improve image quality from noisy data, such as low-dose X-rays or accelerated MRI scans. How…
Agentic Large Language Models for Training-Free Neuro-Radiological Image Analysis
Ayhan Can Erdur, Daniel Scholz, Jiazhen Pan +3
State-of-the-art large language models (LLMs) show high performance in general visual question answering. However, a fundamental limitation remains: current architectures lack the…
WSI-INR: Implicit Neural Representations for Lesion Segmentation in Whole-Slide Images
Yunheng Wu, Wenqi Huang, Liangyi Wang +4
Whole-slide images (WSIs) are fundamental for computational pathology, where accurate lesion segmentation is critical for clinical decision making. Existing methods partition WSIs…
MedOpenClaw and MedFlowBench: Auditing Medical Agents in Full-Study Workflows
Weixiang Shen, Chengzhi Shen, Yanzhu Hu +12
Medical imaging benchmarks often evaluate VLMs on pre-selected 2D images, slices, crops, or patches, making evaluation closer to visual recognition. Real clinical workflows impose…
VariViT: A Vision Transformer for Variable Image Sizes
Aswathi Varma, Suprosanna Shit, Chinmay Prabhakar +5
Vision Transformers (ViTs) have emerged as the state-of-the-art architecture in representation learning, leveraging self-attention mechanisms to excel in various tasks. ViTs split…
VERIDAH: Solving Enumeration Anomaly Aware Vertebra Labeling across Imaging Sequences
Hendrik Möller, Hanna Schoen, Robert Graf +14
The human spine commonly consists of seven cervical, twelve thoracic, and five lumbar vertebrae. However, enumeration anomalies may result in individuals having eleven or thirteen…
Optimizing Rank for High-Fidelity Implicit Neural Representations
Julian McGinnis, Florian A. Hölzl, Suprosanna Shit +6
Implicit Neural Representations (INRs) based on vanilla Multi-Layer Perceptrons (MLPs) are widely believed to be incapable of representing high-frequency content. This has directed…
Hide-and-Seek Attribution: Weakly Supervised Segmentation of Vertebral Metastases in CT
Matan Atad, Alexander W. Marka, Lisa Steinhelfer +10
Accurate segmentation of vertebral metastasis in CT is clinically important yet difficult to scale, as voxel-level annotations are scarce and both lytic and blastic lesions often r…
Disentangling Progress in Medical Image Registration: Beyond Trend-Driven Architectures towards Domain-Specific Strategies
Bailiang Jian, Jiazhen Pan, Rohit Jena +5
Medical image registration drives quantitative analysis across organs, modalities, and patient populations. Recent deep learning methods often combine low-level "trend-driven" comp…
MultiMAE for Brain MRIs: Robustness to Missing Inputs Using Multi-Modal Masked Autoencoder
Ayhan Can Erdur, Christian Beischl, Daniel Scholz +4
Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we d…
MM-DINOv2: Adapting Foundation Models for Multi-Modal Medical Image Analysis
Daniel Scholz, Ayhan Can Erdur, Viktoria Ehm +4
Vision foundation models like DINOv2 demonstrate remarkable potential in medical imaging despite their origin in natural image domains. However, their design inherently works best…
Contrastive Anatomy-Contrast Disentanglement: A Domain-General MRI Harmonization Method
Daniel Scholz, Ayhan Can Erdur, Robbie Holland +4
Magnetic resonance imaging (MRI) is an invaluable tool for clinical and research applications. Yet, variations in scanners and acquisition parameters cause inconsistencies in image…
Does DINOv3 Set a New Medical Vision Standard? Benchmarking 2D and 3D Classification, Segmentation, and Registration
Che Liu, Yinda Chen, Haoyuan Shi +21
The advent of large-scale vision foundation models, pre-trained on diverse natural images, has marked a paradigm shift in computer vision. However, how the frontier vision foundati…
Addressing Annotation Scarcity in Hyperspectral Brain Image Segmentation with Unsupervised Domain Adaptation
Tim Mach, Daniel Rueckert, Alex Berger +2
This work presents a novel deep learning framework for segmenting cerebral vasculature in hyperspectral brain images. We address the critical challenge of severe label scarcity, wh…
Rule-based Key-Point Extraction for MR-Guided Biomechanical Digital Twins of the Spine
Robert Graf, Tanja Lerchl, Kati Nispel +7
Digital twins offer a powerful framework for subject-specific simulation and clinical decision support, yet their development often hinges on accurate, individualized anatomical mo…
On the notion of missingness for path attribution explainability methods in medical settings: Guiding the selection of medically meaningful baselines
Alexander Geiger, Lars Wagner, Daniel Rueckert +2
The explainability of deep learning models remains a significant challenge, particularly in the medical domain where interpretable outputs are essential for clinical trust and tran…
From Fiber Tracts to Tumor Spread: Biophysical Modeling of Butterfly Glioma Growth Using Diffusion Tensor Imaging
Jonas Weidner, Ivan Ezhov, Michal Balcerak +5
Butterfly tumors are a distinct class of gliomas that span the corpus callosum, producing a characteristic butterfly-shaped appearance on MRI. The distinctive growth pattern of the…
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +26
BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provi…