8 citations · 14 across the 14 of their papers we have counts for
14 papers
When the Edit Changes the Patient: Measuring Identity Preservation in Counterfactual Retinal Images
Andrea Posada, Wenke Karbole, Bach Ngoc Doan +9
Counterfactual medical image generation aims to modify an existing image to reflect a hypothetical scenario in which certain characteristics of the imaged subject are altered, whil…
Stochastic Siamese MAE Pretraining for Longitudinal Medical Images
Taha Emre, Arunava Chakravarty, Thomas Pinetz +9
Temporally aware image representations are crucial for capturing disease progression in 3D volumes of longitudinal medical datasets. However, recent state-of-the-art self-supervise…
Topology Optimization in Medical Image Segmentation with Fast Euler Characteristic
Liu Li, Qiang Ma, Cheng Ouyang +3
Deep learning-based medical image segmentation techniques have shown promising results when evaluated based on conventional metrics such as the Dice score or Intersection-over-Unio…
Forecasting Disease Progression with Parallel Hyperplanes in Longitudinal Retinal OCT
Arunava Chakravarty, Taha Emre, Dmitrii Lachinov +8
Predicting future disease progression risk from medical images is challenging due to patient heterogeneity, and subtle or unknown imaging biomarkers. Moreover, deep learning (DL) m…
OTIS: Learning High-Quality Time Series Features With Tiny Encoders
Özgün Turgut, Philip Müller, Martin J. Menten +1
We introduce OTIS, an open time series encoder that yields high-quality time series features for downstream deployment on any system, including resource-constrained wearables and i…
Universal Topology Refinement for Medical Image Segmentation with Polynomial Feature Synthesis
Liu Li, Hanchun Wang, Matthew Baugh +5
Although existing medical image segmentation methods provide impressive pixel-wise accuracy, they often neglect topological correctness, making their segmentations unusable for man…
Specialized curricula for training vision-language models in retinal image analysis
Robbie Holland, Thomas R. P. Taylor, Christopher Holmes +13
Clinicians spend a significant amount of time reviewing medical images and transcribing their findings regarding patient diagnosis, referral and treatment in text form. Vision-lang…
Weakly Supervised Learning of Cortical Surface Reconstruction from Segmentations
Qiang Ma, Liu Li, Emma C. Robinson +2
Existing learning-based cortical surface reconstruction approaches heavily rely on the supervision of pseudo ground truth (pGT) cortical surfaces for training. Such pGT surfaces ar…
Deep-learning-based clustering of OCT images for biomarker discovery in age-related macular degeneration (Pinnacle study report 4)
Robbie Holland, Rebecca Kaye, Ahmed M. Hagag +9
Diseases are currently managed by grading systems, where patients are stratified by grading systems into stages that indicate patient risk and guide clinical management. However, t…
The Developing Human Connectome Project: A Fast Deep Learning-based Pipeline for Neonatal Cortical Surface Reconstruction
Qiang Ma, Kaili Liang, Liu Li +6
The Developing Human Connectome Project (dHCP) aims to explore developmental patterns of the human brain during the perinatal period. An automated processing pipeline has been deve…
Spatiotemporal Representation Learning for Short and Long Medical Image Time Series
Chengzhi Shen, Martin J. Menten, Hrvoje Bogunović +7
Analyzing temporal developments is crucial for the accurate prognosis of many medical conditions. Temporal changes that occur over short time scales are key to assessing the health…
3DTINC: Time-Equivariant Non-Contrastive Learning for Predicting Disease Progression from Longitudinal OCTs
Taha Emre, Arunava Chakravarty, Antoine Rivail +10
Self-supervised learning (SSL) has emerged as a powerful technique for improving the efficiency and effectiveness of deep learning models. Contrastive methods are a prominent famil…
3D Arterial Segmentation via Single 2D Projections and Depth Supervision in Contrast-Enhanced CT Images
Alina F. Dima, Veronika A. Zimmer, Martin J. Menten +8
Automated segmentation of the blood vessels in 3D volumes is an essential step for the quantitative diagnosis and treatment of many vascular diseases. 3D vessel segmentation is bei…
A skeletonization algorithm for gradient-based optimization
Martin J. Menten, Johannes C. Paetzold, Veronika A. Zimmer +6
The skeleton of a digital image is a compact representation of its topology, geometry, and scale. It has utility in many computer vision applications, such as image description, se…