44 citations · 157 across the 58 of their papers we have counts for
21 papers · 1 filter
Optimizing Rank for High-Fidelity Implicit Neural Representations
Julian McGinnis, Florian A. Hölzl, Suprosanna Shit +6
Implicit Neural Representations (INRs) based on vanilla Multi-Layer Perceptrons (MLPs) are widely believed to be incapable of representing high-frequency content. This has directed…
Hide-and-Seek Attribution: Weakly Supervised Segmentation of Vertebral Metastases in CT
Matan Atad, Alexander W. Marka, Lisa Steinhelfer +10
Accurate segmentation of vertebral metastasis in CT is clinically important yet difficult to scale, as voxel-level annotations are scarce and both lytic and blastic lesions often r…
Disentangling Progress in Medical Image Registration: Beyond Trend-Driven Architectures towards Domain-Specific Strategies
Bailiang Jian, Jiazhen Pan, Rohit Jena +5
Medical image registration drives quantitative analysis across organs, modalities, and patient populations. Recent deep learning methods often combine low-level "trend-driven" comp…
MultiMAE for Brain MRIs: Robustness to Missing Inputs Using Multi-Modal Masked Autoencoder
Ayhan Can Erdur, Christian Beischl, Daniel Scholz +4
Missing input sequences are common in medical imaging data, posing a challenge for deep learning models reliant on complete input data. In this work, inspired by MultiMAE [2], we d…
MM-DINOv2: Adapting Foundation Models for Multi-Modal Medical Image Analysis
Daniel Scholz, Ayhan Can Erdur, Viktoria Ehm +4
Vision foundation models like DINOv2 demonstrate remarkable potential in medical imaging despite their origin in natural image domains. However, their design inherently works best…
Contrastive Anatomy-Contrast Disentanglement: A Domain-General MRI Harmonization Method
Daniel Scholz, Ayhan Can Erdur, Robbie Holland +4
Magnetic resonance imaging (MRI) is an invaluable tool for clinical and research applications. Yet, variations in scanners and acquisition parameters cause inconsistencies in image…
Does DINOv3 Set a New Medical Vision Standard? Benchmarking 2D and 3D Classification, Segmentation, and Registration
Che Liu, Yinda Chen, Haoyuan Shi +21
The advent of large-scale vision foundation models, pre-trained on diverse natural images, has marked a paradigm shift in computer vision. However, how the frontier vision foundati…
Addressing Annotation Scarcity in Hyperspectral Brain Image Segmentation with Unsupervised Domain Adaptation
Tim Mach, Daniel Rueckert, Alex Berger +2
This work presents a novel deep learning framework for segmenting cerebral vasculature in hyperspectral brain images. We address the critical challenge of severe label scarcity, wh…
Rule-based Key-Point Extraction for MR-Guided Biomechanical Digital Twins of the Spine
Robert Graf, Tanja Lerchl, Kati Nispel +7
Digital twins offer a powerful framework for subject-specific simulation and clinical decision support, yet their development often hinges on accurate, individualized anatomical mo…
On the notion of missingness for path attribution explainability methods in medical settings: Guiding the selection of medically meaningful baselines
Alexander Geiger, Lars Wagner, Daniel Rueckert +2
The explainability of deep learning models remains a significant challenge, particularly in the medical domain where interpretable outputs are essential for clinical trust and tran…
From Fiber Tracts to Tumor Spread: Biophysical Modeling of Butterfly Glioma Growth Using Diffusion Tensor Imaging
Jonas Weidner, Ivan Ezhov, Michal Balcerak +5
Butterfly tumors are a distinct class of gliomas that span the corpus callosum, producing a characteristic butterfly-shaped appearance on MRI. The distinctive growth pattern of the…
BrainLesion Suite: A Flexible and User-Friendly Framework for Modular Brain Lesion Image Analysis
Florian Kofler, Marcel Rosier, Mehdi Astaraki +26
BrainLesion Suite is a versatile toolkit for building modular brain lesion image analysis pipelines in Python. Following Pythonic principles, BrainLesion Suite is designed to provi…
Parametric shape models for vessels learned from segmentations via differentiable voxelization
Alina F. Dima, Suprosanna Shit, Huaqi Qiu +8
Vessels are complex structures in the body that have been studied extensively in multiple representations. While voxelization is the most common of them, meshes and parametric mode…
Automated Thoracolumbar Stump Rib Detection and Analysis in a Large CT Cohort
Hendrik Möller, Hanna Schön, Alina Dima +10
Thoracolumbar stump ribs are one of the essential indicators of thoracolumbar transitional vertebrae or enumeration anomalies. While some studies manually assess these anomalies an…
Redefining spectral unmixing for in-vivo brain tissue analysis from hyperspectral imaging
Martin Hartenberger, Huzeyfe Ayaz, Fatih Ozlugedik +12
In this paper, we propose a methodology for extracting molecular tumor biomarkers from hyperspectral imaging (HSI), an emerging technology for intraoperative tissue assessment. To…
MAGO-SP: Detection and Correction of Water-Fat Swaps in Magnitude-Only VIBE MRI
Robert Graf, Hendrik Möller, Sophie Starck +15
Volume Interpolated Breath-Hold Examination (VIBE) MRI generates images suitable for water and fat signal composition estimation. While the two-point VIBE provides water-fat-separa…
Fake It Till You Make It: Using Synthetic Data and Domain Knowledge for Improved Text-Based Learning for LGE Detection
Athira J Jacob, Puneet Sharma, Daniel Rueckert
Detection of hyperenhancement from cardiac LGE MRI images is a complex task requiring significant clinical expertise. Although deep learning-based models have shown promising resul…
MedFuncta: A Unified Framework for Learning Efficient Medical Neural Fields
Paul Friedrich, Florentin Bieder, Julian McGinnis +3
Research in medical imaging primarily focuses on discrete data representations that poorly scale with grid resolution and fail to capture the often continuous nature of the underly…
PARASIDE: An Automatic Paranasal Sinus Segmentation and Structure Analysis Tool for MRI
Hendrik Möller, Lukas Krautschick, Matan Atad +9
Chronic rhinosinusitis (CRS) is a common and persistent sinus imflammation that affects 5 - 12\% of the general population. It significantly impacts quality of life and is often di…
TimeFlow: Temporal Conditioning for Longitudinal Brain MRI Registration and Aging Analysis
Bailiang Jian, Jiazhen Pan, Yitong Li +5
Longitudinal brain analysis is essential for understanding healthy aging and identifying pathological deviations. Longitudinal registration of sequential brain MRI underpins such a…
Efficient Deep Learning-based Forward Solvers for Brain Tumor Growth Models
Zeineb Haouari, Jonas Weidner, Yeray Martin-Ruisanchez +5
Glioblastoma, a highly aggressive brain tumor, poses major challenges due to its poor prognosis and high morbidity rates. Partial differential equation-based models offer promising…