Thermodynamic costs of information processing in sensory adaption
arXiv:1404.1027 · doi:10.1371/journal.pcbi.1003974
Abstract
Biological sensory systems react to changes in their surroundings. They are characterized by fast response and slow adaptation to varying environmental cues. Insofar as sensory adaptive systems map environmental changes to changes of their internal degrees of freedom, they can be regarded as computational devices manipulating information. Landauer established that information is ultimately physical, and its manipulation subject to the entropic and energetic bounds of thermodynamics. Thus the fundamental costs of biological sensory adaptation can be elucidated by tracking how the information the system has about its environment is altered. These bounds are particularly relevant for small organisms, which unlike everyday computers operate at very low energies. In this paper, we establish a general framework for the thermodynamics of information processing in sensing. With it, we quantify how during sensory adaptation information about the past is erased, while information about the present is gathered. This process produces entropy larger than the amount of old information erased and has an energetic cost bounded by the amount of new information written to memory. We apply these principles to the E. coli's chemotaxis pathway during binary ligand concentration changes. In this regime, we quantify the amount of information stored by each methyl group and show that receptors consume energy in the range of the information-theoretic minimum. Our work provides a basis for further inquiries into more complex phenomena, such as gradient sensing and frequency response.
arXiv comment17 pages, 6 figures
References in corpus (25)
- Stochastic thermodynamics, fluctuation theorems, and molecular machines
- Second Law of Thermodynamics with Discrete Quantum Feedback Control
- Minimal Energy Cost for Thermodynamic Information Processing: Measurement and Information Erasure
- Three detailed fluctuation theorems
- Second law and Landauer principle far from equilibrium
- Nonequilibrium Thermodynamics of Feedback Control
- The thermodynamics of prediction
- The Energetic Costs of Cellular Computation
- The Physical Origins of Entropy Production, Free Energy Dissipation and their Mathematical Representations
- Nonequilibrium Detailed Fluctuation Theorem for Repeated Discrete Feedback
- Comparison of far-from-equilibrium work relations
- Mutual information between in- and output trajectories of biochemical networks
- Thermodynamics of feedback controlled systems
- Information Thermodynamics on Causal Networks
- Memory erasure in small systems
- Role of Mutual Information in Entropy Production under Information Exchanges
- Information-theoretic vs. thermodynamic entropy production in autonomous sensory networks
- Comparison of work fluctuation relations
- The thermodynamic cost of measurements
- Mutual Entropy-Production and Sensing in Bipartite Systems
- Noise Filtering Strategies of Adaptive Signaling Networks: The Case of E. Coli Chemotaxis
- Unraveling Adaptation in Eukaryotic Pathways: Lessons from Protocells
- Differential Landauer's principle
- Adaptive machine and its thermodynamic costs
- Efficient fold-change detection based on protein-protein interactions
Cited by in corpus (81)
- Broken detailed balance and non-equilibrium dynamics in living systems
- Nonequilibrium Thermodynamics of Chemical Reaction Networks: Wisdom from Stochastic Thermodynamics
- Efficiency of cellular information processing
- Cost and Precision of Brownian Clocks
- Stochastic thermodynamics of computation
- Maxwell's demon in biochemical signal transduction with feedback loop
- Stochastic thermodynamic interpretation of information geometry
- Improved bounds on entropy production in living systems
- Stochastic time-evolution, information geometry and the Cramer-Rao Bound
- The dissipation-time uncertainty relation
- Statistics of Infima and Stopping Times of Entropy Production and Applications to Active Molecular Processes
- Sensory capacity: an information theoretical measure of the performance of a sensor
- Multipartite information flow for multiple Maxwell demons
- The thermodynamics of computational copying in biochemical systems
- Nonequilibrium sensing and its analogy to kinetic proofreading
- Thermodynamic Bound on the Asymmetry of Cross-Correlations
- Coherence of Biochemical Oscillations is Bounded by Driving Force and Network Topology
- Biochemical machines for the interconversion of mutual information and work
- The free energy cost of reducing noise while maintaining a high sensitivity
- Stochastic Thermodynamics of Learning
- Landauer in the age of synthetic biology: energy consumption and information processing in biochemical networks
- Thermodynamic limits to information harvesting by sensory systems
- Thermodynamics of Chemical Waves
- An energy-speed-accuracy relation in complex networks for biological discrimination
- Theoretical foundations of studying criticality in the brain
- Universal minimal cost of coherent biochemical oscillations
- Energy and information flows in autonomous systems
- Limits of Predictions in Thermodynamic Systems: A Review
- Physical constraints in intracellular signaling: the cost of sending a bit
- Thermodynamics of stochastic Turing machines
- Backward transfer entropy: Informational measure for detecting hidden Markov models and its interpretations in thermodynamics, gambling and causality
- Unified framework for the entropy production and the stochastic interaction based on information geometry
- Linear Irreversible Thermodynamics and Onsager Reciprocity for Information-driven Engines
- Thermodynamic uncertainty relation to assess biological processes
- Information flow, Gating, and Energetics in dimeric molecular motors
- The free energy requirements of biological organisms; implications for evolution
- Intelligent Soft Matter: Towards Embodied Intelligence
- What we learn from the learning rate
- A universal tradeoff between power, precision and speed in physical communication
- Role of sufficient statistics in stochastic thermodynamics and its implication to sensory adaptation
- Landauer Principle and Thermodynamics of Computation
- Work fluctuation-dissipation trade-off in heat engines
- Energy dissipation in an adaptive molecular circuit
- Thermodynamics of Information Processing Based on Enzyme Kinetics: an Exactly Solvable Model of Information Pump
- Universal bounds on the performance of information-thermodynamic engine
- Fluctuations When Driving Between Nonequilibrium Steady States
- Trade-offs in delayed information transmission in biochemical networks
- Optimal inference strategies and their implications for the linear noise approximation
- Multi-dimensional biochemical information processing of dynamical patterns
- A thermodynamic paradigm for solution demixing inspired by nuclear transport in living cells
- Universal bounds on optimization of free energy harvesting
- The Fitness Value of Information with Delayed Phenotype Switching: Optimal Performance with Imperfect Sensing
- Stochastic thermodynamics of interacting degrees of freedom: Fluctuation theorems for detached path probabilities
- Quantifying configurational information for a stochastic particle in a flow-field
- Thermodynamic efficiency of learning a rule in neural networks
- Non-reciprocal hidden degrees of freedom: A unifying perspective on memory, feedback, and activity
- Maxwell's demons with finite size and response time
- Decomposing Thermodynamic Dissipation of Linear Langevin Systems via Oscillatory Modes and Its Application to Neural Dynamics
- Dispersion of the time spent in a state: General expression for unicyclic model and dissipation-less precision
- Minimal informational requirements for fitness
- Statistical mechanical foundation of Weber-Fechner laws
- Thermodynamics of Encoding and Encoders
- Thermodynamic role of main reaction pathway and multi-body information flow in membrane transport
- Measurement-Induced Phase Transitions in Informational Active Matter
- Stochastic thermodynamic limit on E. coli adaptation by Information geometric approach
- Foundations of Stochastic Thermodynamics
- Dissipation in non-steady state regulatory circuits
- Stochastic Thermodynamics of Non-reciprocally Interacting Particles and Fields
- Multiple Pareto-optimal solutions of the dissipation-adaptation trade-off
- Thermodynamics of multiple Maxwell demons
- Thermodynamic inference in molecular motors: a Martingale approach
- Detecting concentration changes with cooperative receptors
- Experimentally accessible measurement of irreversibility in stochastic systems by categorizing single-molecule displacements
- Information theory, predictability, and the emergence of complex life
- Information bounds production in replicator systems
- Bacterial chemotaxis: information processing, thermodynamics, and behavior
- Active energy harvesting and work transduction by hair-cell bundles in bullfrog's inner ear
- Revisiting thermodynamics in computation and information theory
- Information-thermodynamic characterization of stochastic Boolean networks
- Optimizing Energetic cost of Uncertainty in a Driven System With and Without Feedback
- Acceleration of enzymatic reactions due to nearby inactive binding sites