2.2k citations
- National Institutes of HealthUS35 papers
- Center for Cancer ResearchUS19 papers
- Frederick National Laboratory for Cancer ResearchUS13 papers
- University of PennsylvaniaUS11 papers
- Division of Cancer Epidemiology and Genetics9 papers
- University of ZurichCH9 papers
- Harvard UniversityUS8 papers
- National Institutes of Health Clinical CenterUS8 papers
- Johns Hopkins UniversityUS6 papers
- Leidos (United States)US6 papers
- National Institute of Allergy and Infectious DiseasesUS6 papers
- Northwestern UniversityUS6 papers
81 papers
LCPan: efficient variation graph construction using Locally Consistent Parsing
Akmuhammet Ashyralyyev, Zülal Bingöl, Begüm Filiz Öz +5
Efficient and consistent string processing is critical in the exponentially growing genomic data era. Locally Consistent Parsing (LCP) addresses this need by partitioning an input…
The NIAID Discovery Portal: A Unified Search Engine for Infectious and Immune-Mediated Disease Datasets
Ginger Tsueng, Emily Bullen, Candice Czech +18
The NIAID Data Ecosystem Discovery Portal (https://data.niaid.nih.gov) provides a unified search interface for over 4 million datasets relevant to infectious and immune-mediated di…
Retrospective score tests versus prospective score tests for genetic association with case-control data
Yukun Liu, Pengfei Li, Lei Song +2
Since the seminal work by Prentice and Pyke (1979), the prospective logistic likelihood has become the standard method of analysis for retrospectively collected case-control data,…
Classification of Multi-Parametric Body MRI Series Using Deep Learning
Boah Kim, Tejas Sudharshan Mathai, Kimberly Helm +2
Multi-parametric magnetic resonance imaging (mpMRI) exams have various series types acquired with different imaging protocols. The DICOM headers of these series often have incorrec…
Estimating the Heritability of Longitudinal Rate-of-Change: Genetic Insights into PSA Velocity in Prostate Cancer-Free Individuals
Pei Zhang, Xiaoyu Wang, Jianxin Shi +1
Serum prostate-specific antigen (PSA) is widely used for prostate cancer screening. While the genetics of PSA levels has been studied to enhance screening accuracy, the genetic bas…
Leveraging large language models for structured information extraction from pathology reports
Jeya Balaji Balasubramanian, Daniel Adams, Ioannis Roxanis +4
Background: Structured information extraction from unstructured histopathology reports facilitates data accessibility for clinical research. Manual extraction by experts is time-co…