94 citations · 251 across the 6 of their papers we have counts for
6 papers
SciFive: a text-to-text transformer model for biomedical literature
Long N. Phan, James T. Anibal, Hieu Tran +4
In this report, we introduce SciFive, a domain-specific T5 model that has been pre-trained on large biomedical corpora. Our model outperforms the current SOTA methods (i.e. BERT, B…
Quantitative Immunology for Physicists
Grégoire Altan-Bonnet, Thierry Mora, Aleksandra M. Walczak
The adaptive immune system is a dynamical, self-organized multiscale system that protects vertebrates from both pathogens and internal irregularities, such as tumours. For these re…
Biochemical feedback and its application to immune cells II: dynamics and critical slowing down
Tommy A. Byrd, Amir Erez, Robert M. Vogel +4
Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed st…
Universality of biochemical feedback and its application to immune cells
Amir Erez, Tommy A. Byrd, Robert M. Vogel +2
We map a class of well-mixed stochastic models of biochemical feedback in steady state to the mean-field Ising model near the critical point. The mapping provides an effective temp…
The case for absolute ligand discrimination : modeling information processing and decision by immune T cells
Paul François, Grégoire Altan-Bonnet
Some cells have to take decision based on the quality of surroundings ligands, almost irrespective of their quantity, a problem we name "absolute discrimination". An example of abs…
Discerning Aggregation in Homogeneous Ensembles: A General Description of Photon Counting Spectroscopy in Diffusing Systems
Hai-cang Ren, Noel L. Goddard, Gregoire Altan-Bonnet +1
In order to discern aggregation in solutions, we present a quantum mechanical analog of the photon statistics from fluorescent molecules diffusing through a focused beam. A generat…