26 citations
2 papers
q-bio.BM2008★ 3 cited
Segmentation of DNA sequences into twostate regions and melting fork regions
Eivind Tøstesen, Geir Kjetil Sandve, Fang Liu +1
The accurate prediction and characterization of DNA melting domains by computational tools could facilitate a broad range of biological applications. However, no algorithm for melt…
q-bio.BM2004★ 26 cited
Speed-Up of DNA Melting Algorithm with Complete Nearest Neighbor Properties
E. Tostesen, F. Liu, T. -K. Jenssen +1
We describe a faster and more accurate algorithm for computing the statistical mechanics of DNA denaturation according to the Poland-Scheraga type. Nearest neighbor thermodynamics…