79 citations · 125 across the 5 of their papers we have counts for
5 papers
The Genomic HyperBrowser: inferential genomics at the sequence level
Geir K. Sandve, Sveinung Gundersen, Halfdan Rydbeck +11
The immense increase in the generation of genomic scale data poses an unmet analytical challenge, due to a lack of established methodology with the required flexibility and power.…
Segmentation of DNA sequences into twostate regions and melting fork regions
Eivind Tøstesen, Geir Kjetil Sandve, Fang Liu +1
The accurate prediction and characterization of DNA melting domains by computational tools could facilitate a broad range of biological applications. However, no algorithm for melt…
A stitch in time: Efficient computation of genomic DNA melting bubbles
Eivind Tøstesen
Background: It is of biological interest to make genome-wide predictions of the locations of DNA melting bubbles using statistical mechanics models. Computationally, this poses the…
Partly melted DNA conformations obtained with a probability peak finding method
E. Tostesen
Peaks in the probabilities of loops or bubbles, helical segments, and unzipping ends in melting DNA are found in this article using a peak finding method that maps the hierarchical…
Speed-Up of DNA Melting Algorithm with Complete Nearest Neighbor Properties
E. Tostesen, F. Liu, T. -K. Jenssen +1
We describe a faster and more accurate algorithm for computing the statistical mechanics of DNA denaturation according to the Poland-Scheraga type. Nearest neighbor thermodynamics…