activity
20082026
most citedThe Genomic HyperBrowser: inferential genomics at the sequence level

79 citations · 259 across the 14 of their papers we have counts for

collaborators

15 papers

cs.LG2026

Beyond Defensive Reporting: Machine Learning for Active Anti-Money Laundering Control in Insurance

Dara Goldar, Geir Kjetil Ferkingstad Sandve, Martin Jullum

Money laundering through insurance claims poses a threat to insurers both through fraudulent payouts and reputational and regulatory risk. Despite this, little research has examine…

cs.LG2025

Attribution assignment for deep-generative sequence models enables interpretability analysis using positive-only data

Robert Frank, Michael Widrich, Rahmad Akbar +4

Generative machine learning models offer a powerful framework for therapeutic design by efficiently exploring large spaces of biological sequences enriched for desirable properties…

q-bio.GN2025

inMOTIFin: a lightweight end-to-end simulation software for regulatory sequences

Katalin Ferenc, Lorenzo Martini, Ieva Rauluseviciute +2

The accurate development, assessment, interpretation, and benchmarking of bioinformatics frameworks for analyzing transcriptional regulatory grammars rely on controlled simulations…

cs.LG2024

CAVACHON: a hierarchical variational autoencoder to integrate multi-modal single-cell data

Ping-Han Hsieh, Ru-Xiu Hsiao, Katalin Ferenc +6

Paired single-cell sequencing technologies enable the simultaneous measurement of complementary modalities of molecular data at single-cell resolution. Along with the advances in t…

q-bio.QM2022★ 5 cited

ImmunoLingo: Linguistics-based formalization of the antibody language

Mai Ha Vu, Philippe A. Robert, Rahmad Akbar +4

Apparent parallels between natural language and biological sequence have led to a recent surge in the application of deep language models (LMs) to the analysis of antibody and othe…

q-bio.QM2022★ 63 cited

Linguistically inspired roadmap for building biologically reliable protein language models

Mai Ha Vu, Rahmad Akbar, Philippe A. Robert +4

Deep neural-network-based language models (LMs) are increasingly applied to large-scale protein sequence data to predict protein function. However, being largely black-box models a…