89 citations · 209 across the 7 of their papers we have counts for
7 papers
COGEDAP: A COmprehensive GEnomic Data Analysis Platform
Bayram Cevdet Akdeniz, Oleksandr Frei, Espen Hagen +15
Non-sharable sensitive data collection and analysis in large-scale consortia for genomic research is complicated. Time consuming issues in installing software arise due to differen…
OncoEnrichR: cancer-dedicated gene set interpretation
Sigve Nakken, Sveinung Gundersen, Fabian L. M. Bernal +3
Genome-scale screening experiments in cancer produce long lists of candidate genes that require extensive interpretation for biological insight and prioritization for follow-up stu…
Hi-C-constrained physical models of human chromosomes recover functionally-related properties of genome organization
Marco Di Stefano, Jonas Paulsen, Tonje G. Lien +2
Combining genome-wide structural models with phenomenological data is at the forefront of efforts to understand the organizational principles regulating the human genome. Here, we…
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE
Doug James, Nancy Wilkins-Diehr, Victoria Stodden +52
This is the final report on reproducibility@xsede, a one-day workshop held in conjunction with XSEDE14, the annual conference of the Extreme Science and Engineering Discovery Envir…
The Genomic HyperBrowser: inferential genomics at the sequence level
Geir K. Sandve, Sveinung Gundersen, Halfdan Rydbeck +11
The immense increase in the generation of genomic scale data poses an unmet analytical challenge, due to a lack of established methodology with the required flexibility and power.…
Segmentation of DNA sequences into twostate regions and melting fork regions
Eivind Tøstesen, Geir Kjetil Sandve, Fang Liu +1
The accurate prediction and characterization of DNA melting domains by computational tools could facilitate a broad range of biological applications. However, no algorithm for melt…