30 citations
- The University of TokyoJP2 papers
- Bank of JapanJP1 paper
- CTI Engineering (Japan)JP1 paper
- Hokkaido UniversityJP1 paper
- Kochi University of TechnologyJP1 paper
- National Astronomical Observatory of JapanJP1 paper
- National Institute of GeneticsJP1 paper
- NTT Basic Research LaboratoriesJP1 paper
- Ochanomizu UniversityJP1 paper
- Protein Research FoundationJP1 paper
- The Graduate University for Advanced Studies, SOKENDAIJP1 paper
- The University of OsakaJP1 paper
Showing 2007Show all
3 papers · 1 filter
cond-mat.soft2007★ 18 cited
Calculation of absolute free energy of binding for theophylline and its analogs to RNA aptamer using nonequilibrium work values
Yoshiaki Tanida, Masakatsu Ito, Hideaki Fujitani
The massively parallel computation of absolute binding free energy with a well-equilibrated system (MP-CAFEE) has been developed [H. Fujitani, Y. Tanida, M. Ito, G. Jayachandran, C…
physics.comp-ph2007★ 18 cited
Wang-Landau molecular dynamics technique to search for low-energy conformational space of proteins
Takehiro Nagasima, Akira R. Kinjo, Takashi Mitsui +1
Multicanonical molecular dynamics (MD) is a powerful technique for sampling conformations on rugged potential surfaces such as protein. However, it is notoriously difficult to esti…
cond-mat.mtrl-sci2007★ 30 cited
Tip artifact in atomic force microscopy observations of InAs quantum dots grown in Stranski-Krastanow mode
Ken-ichi Shiramine, Shunichi Muto, Tamaki Shibayama +7
The tip artifact in atomic force microscopy (AFM) observations of InAs islands was evaluated quantitatively. The islands were grown in the Stranski-Krastanow mode of molecular beam…