76 citations
- Centre National de la Recherche ScientifiqueFR13 papers
- Université de MontpellierFR12 papers
- Laboratoire Charles CoulombFR8 papers
- Centre de Biologie StructuraleFR3 papers
- InsermFR3 papers
- Ludwig-Maximilians-Universität MünchenDE3 papers
- Max Planck Institute for InformaticsDE2 papers
- Saarland UniversityDE2 papers
- Université de LorraineFR2 papers
- University of AberdeenGB2 papers
- University of EdinburghGB2 papers
- Alexander Fleming Biomedical Sciences Research CenterGR1 paper
14 papers
Open and Sustainable AI: challenges, opportunities and the road ahead in the life sciences (October 2025 -- Version 2)
Gavin Farrell, Eleni Adamidi, Rafael Andrade Buono +27
Artificial intelligence (AI) has recently seen transformative breakthroughs in the life sciences, expanding possibilities for researchers to interpret biological information at an…
A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks
Hamid Rahkooy, Ovidiu Radulescu, Thomas Sturm
Motivated by problems from Chemical Reaction Network Theory, we investigate whether steady state ideals of reversible reaction networks are generated by binomials. We take an algeb…
Exclusion process subject to conformational size changes
Yvan Rousset, Luca Ciandrini, Norbert Kern
We introduce a model for stochastic transport on a one-dimensional substrate with particles assuming different conformations during their stepping cycles. These conformations corre…
Phase separation of polymer-bound particles induced by loop-mediated 1D effective long-range interactions
G. David, J. -C. Walter, C. P. Broedersz +5
The cellular cytoplasm is organized into compartments. Phase separation is a simple manner to create membrane-less compartments in order to confine and localize particles like prot…
Driven transport on a flexible polymer with particle recycling: a model inspired by transcription and translation
Lucas D. Fernandes, Luca Ciandrini
Many theoretical works have attempted to coarse grain gene expression at the level of transcription and translation via frameworks based on exclusion processes. Usually in these mo…
Power series solution of the inhomogeneous exclusion process
Juraj Szavits-Nossan, M. Carmen Romano, Luca Ciandrini
We develop a power series method for the nonequilibrium steady state of the inhomogeneous one-dimensional totally asymmetric simple exclusion process (TASEP) in contact with two pa…