Transitions Induced by the Discreteness of Molecules in a Small Autocatalytic System
arXiv:physics/0008238 · doi:10.1103/PhysRevLett.86.2459
Abstract
Autocatalytic reaction system with a small number of molecules is studied numerically by stochastic particle simulations. A novel state due to fluctuation and discreteness in molecular numbers is found, characterized as extinction of molecule species alternately in the autocatalytic reaction loop. Phase transition to this state with the change of the system size and flow is studied, while a single-molecule switch of the molecule distributions is reported. Relevance of the results to intracellular processes are briefly discussed.
5 pages, 4 figures
References in corpus (1)
Cited by in corpus (41)
- Noise-Induced Bistable States and Their Mean Switching Time in Foraging Colonies
- A noise-induced mechanism for biological homochirality of early life self-replicators
- Intra- and intercellular fluctuations in Min-protein dynamics decrease with cell length
- Molecular Discreteness in Reaction-Diffusion Systems Yields Steady States Not Seen in the Continuum Limit
- Enhanced stochastic oscillations in autocatalytic reactions
- Reaction coordinates for the flipping of genetic switches
- Genetic Toggle Switch in the Absence of Cooperative Binding: Exact Results
- Noise-induced metastability in biochemical networks
- Consensus and diversity in multi-state noisy voter models
- Transition Phenomena Induced by Internal Noise and Quasi-absorbing State
- Recursiveness, Switching, and Fluctuations in a Replicating Catalytic Network
- Reproduction of a Protocell by Replication of Minority Molecule in Catalytic Reaction Network
- Exact results for a noise-induced bistable system
- Theoretical Analysis of Discreteness-Induced Transition in Autocatalytic Reaction Dynamics
- A spatial model of autocatalytic reactions
- Alteration of Chemical Concentrations through Discreteness-Induced Transitions in Small Autocatalytic Systems
- Discreteness-induced Transition in Catalytic Reaction Networks
- Zealots in multi-state noisy voter models
- Discreteness-induced Stochastic Steady State in Reaction Diffusion Systems: Self-consistent Analysis and Stochastic Simulations
- Stochastic Chemical Reaction Networks for Robustly Approximating Arbitrary Probability Distributions
- Extinction dynamics of a discrete population in an oasis
- Optimal size for emergence of self-replicating polymer system
- Reaction Kinetics in a Tight Spot
- Switching Dynamics in Reaction Networks Induced by Molecular Discreteness
- Emergence of Dynamic Cooperativity in the Stochastic Kinetics of Fluctuating Enzymes
- Multinomial Diffusion Equation
- Nonparametric model reconstruction for stochastic differential equation from discretely observed time-series data
- Emergence of Hierarchy on a Network of Complementary Agents
- Discreteness effects in a reacting system of particles with finite interaction radius
- Motif Analysis for Small-Number Effects in Chemical Reaction Dynamics
- Discreteness-Induced Slow Relaxation in Reversible Catalytic Reaction Networks
- The statistics of fixation times for systems with recruitment
- Strong approximation of density dependent Markov chains on bounded domains
- Exponential growth for self-reproduction in a catalytic reaction network: relevance of a minority molecular species and crowdedness
- Creation and Reproduction of Model Cells with Semipermeable Membrane
- Discreteness-induced transitions in multi-body reaction systems
- Discreteness-Induced Transitions in Autocatalytic Systems
- Noise-Induced Polarization Switch in Single and Multiplex Complex Networks
- Origin of genetic information from minority control in a replicating system with mutually catalytic molecules
- Kinetic Origin of Heredity in a Replicating System with a Catalytic Network
- An algebraic method to calculate parameter regions for constrained steady-state distribution in stochastic reaction networks